Hb_000739_100

Information

Type -
Description -
Location Contig739: 118834-124378
Sequence    

Annotation

kegg
ID rcu:RCOM_1612200
description ku P80 DNA helicase, putative
nr
ID XP_002511723.1
description ku P80 DNA helicase, putative [Ricinus communis]
swissprot
ID Q9FQ09
description ATP-dependent DNA helicase 2 subunit KU80 OS=Arabidopsis thaliana GN=KU80 PE=1 SV=1
trembl
ID B9RDD3
description ATP-dependent DNA helicase 2 subunit KU80 OS=Ricinus communis GN=RCOM_1612200 PE=3 SV=1
Gene Ontology
ID GO:0043564
description atp-dependent dna helicase 2 subunit ku80-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_56285: 118847-124409
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000739_100 0.0 - - ku P80 DNA helicase, putative [Ricinus communis]
2 Hb_001157_090 0.0578605122 - - PREDICTED: E3 ubiquitin-protein ligase SINAT2-like [Jatropha curcas]
3 Hb_002900_090 0.0625777111 transcription factor TF Family: MYB PREDICTED: uncharacterized protein LOC105646817 [Jatropha curcas]
4 Hb_005000_260 0.0658842036 - - recA family protein [Populus trichocarpa]
5 Hb_000703_150 0.0714565685 - - PREDICTED: F-box/LRR-repeat MAX2 homolog A [Jatropha curcas]
6 Hb_006922_010 0.072017169 - - PREDICTED: F-box/kelch-repeat protein At3g23880-like [Jatropha curcas]
7 Hb_002686_030 0.0752120617 - - PREDICTED: uncharacterized protein LOC105632635 isoform X1 [Jatropha curcas]
8 Hb_033772_030 0.0752390161 - - PREDICTED: CST complex subunit CTC1 [Jatropha curcas]
9 Hb_003370_030 0.0768132513 - - PREDICTED: uncharacterized protein LOC105635547 isoform X2 [Jatropha curcas]
10 Hb_000107_490 0.0798841813 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 5 [Jatropha curcas]
11 Hb_000856_310 0.0801269329 - - PREDICTED: hypersensitive-induced response protein 1 [Jatropha curcas]
12 Hb_000083_120 0.0805641295 - - transcription factor, putative [Ricinus communis]
13 Hb_017862_020 0.0806498218 - - PREDICTED: probable inactive serine/threonine-protein kinase lvsG [Jatropha curcas]
14 Hb_000028_180 0.0806642433 - - PREDICTED: probable serine/threonine protein kinase IREH1 isoform X2 [Jatropha curcas]
15 Hb_007163_120 0.0811780048 - - PREDICTED: COMPASS-like H3K4 histone methylase component WDR5A [Jatropha curcas]
16 Hb_000556_160 0.0813851223 - - PREDICTED: ankyrin repeat and zinc finger domain-containing protein 1 [Jatropha curcas]
17 Hb_000152_660 0.0825060318 - - PREDICTED: BAG family molecular chaperone regulator 7 [Jatropha curcas]
18 Hb_011618_090 0.0831383461 desease resistance Gene Name: ABC_tran ABC transporter family protein [Hevea brasiliensis]
19 Hb_004324_130 0.0849751821 - - polypyrimidine tract binding protein, putative [Ricinus communis]
20 Hb_004724_150 0.0850830182 - - expressed protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_000739_100 Hb_000739_100 Hb_001157_090 Hb_001157_090 Hb_000739_100--Hb_001157_090 Hb_002900_090 Hb_002900_090 Hb_000739_100--Hb_002900_090 Hb_005000_260 Hb_005000_260 Hb_000739_100--Hb_005000_260 Hb_000703_150 Hb_000703_150 Hb_000739_100--Hb_000703_150 Hb_006922_010 Hb_006922_010 Hb_000739_100--Hb_006922_010 Hb_002686_030 Hb_002686_030 Hb_000739_100--Hb_002686_030 Hb_000028_180 Hb_000028_180 Hb_001157_090--Hb_000028_180 Hb_001252_120 Hb_001252_120 Hb_001157_090--Hb_001252_120 Hb_002784_020 Hb_002784_020 Hb_001157_090--Hb_002784_020 Hb_004324_130 Hb_004324_130 Hb_001157_090--Hb_004324_130 Hb_017862_020 Hb_017862_020 Hb_001157_090--Hb_017862_020 Hb_033772_030 Hb_033772_030 Hb_002900_090--Hb_033772_030 Hb_002900_090--Hb_006922_010 Hb_002900_090--Hb_005000_260 Hb_003464_090 Hb_003464_090 Hb_002900_090--Hb_003464_090 Hb_007163_120 Hb_007163_120 Hb_002900_090--Hb_007163_120 Hb_005000_260--Hb_006922_010 Hb_003370_030 Hb_003370_030 Hb_005000_260--Hb_003370_030 Hb_001408_040 Hb_001408_040 Hb_005000_260--Hb_001408_040 Hb_005000_260--Hb_007163_120 Hb_002111_070 Hb_002111_070 Hb_000703_150--Hb_002111_070 Hb_004676_010 Hb_004676_010 Hb_000703_150--Hb_004676_010 Hb_000390_320 Hb_000390_320 Hb_000703_150--Hb_000390_320 Hb_000083_120 Hb_000083_120 Hb_000703_150--Hb_000083_120 Hb_009615_170 Hb_009615_170 Hb_000703_150--Hb_009615_170 Hb_006922_010--Hb_033772_030 Hb_006922_010--Hb_003370_030 Hb_006922_010--Hb_007163_120 Hb_000556_160 Hb_000556_160 Hb_002686_030--Hb_000556_160 Hb_000538_270 Hb_000538_270 Hb_002686_030--Hb_000538_270 Hb_000289_060 Hb_000289_060 Hb_002686_030--Hb_000289_060 Hb_002686_030--Hb_017862_020 Hb_002686_030--Hb_007163_120 Hb_002499_040 Hb_002499_040 Hb_002686_030--Hb_002499_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.83864 5.86755 3.2644 3.66002 3.60146 4.77268
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.92391 3.65162 5.53533 7.34622 2.63648

CAGE analysis