Hb_001157_090

Information

Type -
Description -
Location Contig1157: 64042-69357
Sequence    

Annotation

kegg
ID tcc:TCM_045399
description Seven in absentia of 2 isoform 1
nr
ID XP_012093310.1
description PREDICTED: E3 ubiquitin-protein ligase SINAT2-like [Jatropha curcas]
swissprot
ID Q9M2P4
description E3 ubiquitin-protein ligase SINAT2 OS=Arabidopsis thaliana GN=SINAT2 PE=1 SV=1
trembl
ID A0A067L7D9
description E3 ubiquitin-protein ligase OS=Jatropha curcas GN=JCGZ_19174 PE=3 SV=1
Gene Ontology
ID GO:0005634
description e3 ubiquitin-protein ligase sinat2-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_04710: 64048-69128
cDNA
(Sanger)
(ID:Location)		 018_G10.ab1: 65620-69126 , 053_C16.ab1: 65437-69126

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001157_090 0.0 - - PREDICTED: E3 ubiquitin-protein ligase SINAT2-like [Jatropha curcas]
2 Hb_000739_100 0.0578605122 - - ku P80 DNA helicase, putative [Ricinus communis]
3 Hb_000028_180 0.0684625664 - - PREDICTED: probable serine/threonine protein kinase IREH1 isoform X2 [Jatropha curcas]
4 Hb_001252_120 0.0741588507 - - PREDICTED: delta-1-pyrroline-5-carboxylate synthase-like [Gossypium raimondii]
5 Hb_002784_020 0.0747485439 - - PREDICTED: probable protein arginine N-methyltransferase 3 [Jatropha curcas]
6 Hb_004324_130 0.0793063048 - - polypyrimidine tract binding protein, putative [Ricinus communis]
7 Hb_017862_020 0.0793954476 - - PREDICTED: probable inactive serine/threonine-protein kinase lvsG [Jatropha curcas]
8 Hb_000703_150 0.0795533983 - - PREDICTED: F-box/LRR-repeat MAX2 homolog A [Jatropha curcas]
9 Hb_002217_030 0.0799329855 - - PREDICTED: DNA (cytosine-5)-methyltransferase DRM2 isoform X1 [Jatropha curcas]
10 Hb_002375_010 0.0800218663 - - PREDICTED: C2 and GRAM domain-containing protein At1g03370 isoform X1 [Jatropha curcas]
11 Hb_001232_010 0.0803431874 - - PREDICTED: uncharacterized protein LOC105634976 [Jatropha curcas]
12 Hb_000152_660 0.0810715173 - - PREDICTED: BAG family molecular chaperone regulator 7 [Jatropha curcas]
13 Hb_143629_110 0.0823662232 - - glutamyl-tRNA synthetase, cytoplasmic, putative [Ricinus communis]
14 Hb_003647_130 0.0824898132 - - PREDICTED: uncharacterized protein LOC105646674 [Jatropha curcas]
15 Hb_000907_110 0.0843603423 - - dihydroxyacetone kinase family protein [Populus trichocarpa]
16 Hb_000083_120 0.085886255 - - transcription factor, putative [Ricinus communis]
17 Hb_001357_250 0.086015074 - - PREDICTED: UPF0505 protein C16orf62 homolog [Jatropha curcas]
18 Hb_001761_130 0.0867805311 - - PREDICTED: uncharacterized protein LOC105646118 isoform X1 [Jatropha curcas]
19 Hb_001473_180 0.0870020471 - - glutathione reductase [Hevea brasiliensis]
20 Hb_001635_090 0.0875893542 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 7 isoform X1 [Populus euphratica]

Gene co-expression network

sample Hb_001157_090 Hb_001157_090 Hb_000739_100 Hb_000739_100 Hb_001157_090--Hb_000739_100 Hb_000028_180 Hb_000028_180 Hb_001157_090--Hb_000028_180 Hb_001252_120 Hb_001252_120 Hb_001157_090--Hb_001252_120 Hb_002784_020 Hb_002784_020 Hb_001157_090--Hb_002784_020 Hb_004324_130 Hb_004324_130 Hb_001157_090--Hb_004324_130 Hb_017862_020 Hb_017862_020 Hb_001157_090--Hb_017862_020 Hb_002900_090 Hb_002900_090 Hb_000739_100--Hb_002900_090 Hb_005000_260 Hb_005000_260 Hb_000739_100--Hb_005000_260 Hb_000703_150 Hb_000703_150 Hb_000739_100--Hb_000703_150 Hb_006922_010 Hb_006922_010 Hb_000739_100--Hb_006922_010 Hb_002686_030 Hb_002686_030 Hb_000739_100--Hb_002686_030 Hb_000028_180--Hb_001252_120 Hb_000028_180--Hb_004324_130 Hb_007479_040 Hb_007479_040 Hb_000028_180--Hb_007479_040 Hb_022115_020 Hb_022115_020 Hb_000028_180--Hb_022115_020 Hb_004724_150 Hb_004724_150 Hb_000028_180--Hb_004724_150 Hb_002481_080 Hb_002481_080 Hb_000028_180--Hb_002481_080 Hb_008725_230 Hb_008725_230 Hb_001252_120--Hb_008725_230 Hb_000556_120 Hb_000556_120 Hb_001252_120--Hb_000556_120 Hb_001252_120--Hb_004324_130 Hb_001584_120 Hb_001584_120 Hb_001252_120--Hb_001584_120 Hb_001252_120--Hb_022115_020 Hb_002784_020--Hb_017862_020 Hb_164544_010 Hb_164544_010 Hb_002784_020--Hb_164544_010 Hb_002375_010 Hb_002375_010 Hb_002784_020--Hb_002375_010 Hb_000696_230 Hb_000696_230 Hb_002784_020--Hb_000696_230 Hb_000617_180 Hb_000617_180 Hb_002784_020--Hb_000617_180 Hb_028872_090 Hb_028872_090 Hb_002784_020--Hb_028872_090 Hb_000181_400 Hb_000181_400 Hb_004324_130--Hb_000181_400 Hb_000111_290 Hb_000111_290 Hb_004324_130--Hb_000111_290 Hb_001876_050 Hb_001876_050 Hb_004324_130--Hb_001876_050 Hb_004324_130--Hb_008725_230 Hb_007416_120 Hb_007416_120 Hb_004324_130--Hb_007416_120 Hb_006831_140 Hb_006831_140 Hb_004324_130--Hb_006831_140 Hb_000207_180 Hb_000207_180 Hb_017862_020--Hb_000207_180 Hb_017862_020--Hb_002686_030 Hb_000225_040 Hb_000225_040 Hb_017862_020--Hb_000225_040 Hb_000395_130 Hb_000395_130 Hb_017862_020--Hb_000395_130 Hb_000579_230 Hb_000579_230 Hb_017862_020--Hb_000579_230
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
14.6951 17.4881 14.1453 14.3683 17.7937 17.2893
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
15.7568 13.4409 19.8941 28.2885 9.458

CAGE analysis