Hb_000207_180

Information

Type -
Description -
Location Contig207: 213609-222882
Sequence    

Annotation

kegg
ID rcu:RCOM_0686080
description hypothetical protein
nr
ID XP_012069067.1
description PREDICTED: calponin homology domain-containing protein DDB_G0272472 [Jatropha curcas]
swissprot
ID Q4V893
description GPALPP motifs-containing protein 1 OS=Rattus norvegicus GN=Gpalpp1 PE=2 SV=1
trembl
ID A0A067LQ71
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_03893 PE=4 SV=1
Gene Ontology
ID GO:0005634
description dnaj heat shock n-terminal domain-containing protein isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_21319: 213609-222582 , PASA_asmbl_21320: 219415-219752
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000207_180 0.0 - - PREDICTED: calponin homology domain-containing protein DDB_G0272472 [Jatropha curcas]
2 Hb_009270_020 0.0585052987 - - PREDICTED: LOW QUALITY PROTEIN: helicase and polymerase-containing protein TEBICHI [Jatropha curcas]
3 Hb_000441_120 0.0588208046 - - PREDICTED: DNA-damage-repair/toleration protein DRT111, chloroplastic isoform X1 [Jatropha curcas]
4 Hb_017862_020 0.0604029049 - - PREDICTED: probable inactive serine/threonine-protein kinase lvsG [Jatropha curcas]
5 Hb_000347_070 0.0605592088 - - conserved hypothetical protein [Ricinus communis]
6 Hb_006420_040 0.0620512099 transcription factor TF Family: Orphans PREDICTED: paired amphipathic helix protein Sin3-like 4 isoform X2 [Jatropha curcas]
7 Hb_000731_270 0.062418548 - - PREDICTED: polyadenylate-binding protein RBP45B isoform X1 [Jatropha curcas]
8 Hb_000579_230 0.0637294725 - - PREDICTED: bifunctional nuclease 1 [Jatropha curcas]
9 Hb_000494_070 0.0640891423 - - PREDICTED: protein ARABIDILLO 1-like [Jatropha curcas]
10 Hb_000617_180 0.0653815432 - - hypothetical protein B456_013G125900 [Gossypium raimondii]
11 Hb_001550_060 0.0687712561 - - PREDICTED: serine/threonine-protein phosphatase BSL3 isoform X4 [Jatropha curcas]
12 Hb_000462_060 0.0701970844 transcription factor TF Family: PHD PREDICTED: uncharacterized protein LOC105642316 isoform X2 [Jatropha curcas]
13 Hb_008024_030 0.0720391207 transcription factor TF Family: Trihelix PREDICTED: uncharacterized protein LOC105648348 [Jatropha curcas]
14 Hb_002375_010 0.0734911168 - - PREDICTED: C2 and GRAM domain-containing protein At1g03370 isoform X1 [Jatropha curcas]
15 Hb_104061_020 0.0742662766 - - PREDICTED: UV-stimulated scaffold protein A homolog [Jatropha curcas]
16 Hb_001814_030 0.0754431148 - - PREDICTED: uncharacterized protein LOC105650634 [Jatropha curcas]
17 Hb_000914_120 0.0756368045 - - PREDICTED: outer envelope protein 80, chloroplastic [Jatropha curcas]
18 Hb_012395_140 0.0760119583 - - PREDICTED: uncharacterized protein LOC105638411 [Jatropha curcas]
19 Hb_000935_010 0.0761273999 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 16 [Jatropha curcas]
20 Hb_001379_110 0.0767013084 - - PREDICTED: sec1 family domain-containing protein MIP3 [Jatropha curcas]

Gene co-expression network

sample Hb_000207_180 Hb_000207_180 Hb_009270_020 Hb_009270_020 Hb_000207_180--Hb_009270_020 Hb_000441_120 Hb_000441_120 Hb_000207_180--Hb_000441_120 Hb_017862_020 Hb_017862_020 Hb_000207_180--Hb_017862_020 Hb_000347_070 Hb_000347_070 Hb_000207_180--Hb_000347_070 Hb_006420_040 Hb_006420_040 Hb_000207_180--Hb_006420_040 Hb_000731_270 Hb_000731_270 Hb_000207_180--Hb_000731_270 Hb_001814_030 Hb_001814_030 Hb_009270_020--Hb_001814_030 Hb_000579_230 Hb_000579_230 Hb_009270_020--Hb_000579_230 Hb_007426_110 Hb_007426_110 Hb_009270_020--Hb_007426_110 Hb_000590_050 Hb_000590_050 Hb_009270_020--Hb_000590_050 Hb_009270_020--Hb_000441_120 Hb_000441_120--Hb_006420_040 Hb_000165_040 Hb_000165_040 Hb_000441_120--Hb_000165_040 Hb_003206_130 Hb_003206_130 Hb_000441_120--Hb_003206_130 Hb_000395_130 Hb_000395_130 Hb_000441_120--Hb_000395_130 Hb_002784_020 Hb_002784_020 Hb_017862_020--Hb_002784_020 Hb_002686_030 Hb_002686_030 Hb_017862_020--Hb_002686_030 Hb_000225_040 Hb_000225_040 Hb_017862_020--Hb_000225_040 Hb_017862_020--Hb_000395_130 Hb_017862_020--Hb_000579_230 Hb_002025_020 Hb_002025_020 Hb_000347_070--Hb_002025_020 Hb_000347_070--Hb_000731_270 Hb_004619_030 Hb_004619_030 Hb_000347_070--Hb_004619_030 Hb_002375_010 Hb_002375_010 Hb_000347_070--Hb_002375_010 Hb_003163_020 Hb_003163_020 Hb_000347_070--Hb_003163_020 Hb_000190_120 Hb_000190_120 Hb_000347_070--Hb_000190_120 Hb_001550_060 Hb_001550_060 Hb_006420_040--Hb_001550_060 Hb_000671_070 Hb_000671_070 Hb_006420_040--Hb_000671_070 Hb_000025_320 Hb_000025_320 Hb_006420_040--Hb_000025_320 Hb_006420_040--Hb_003206_130 Hb_009503_030 Hb_009503_030 Hb_006420_040--Hb_009503_030 Hb_007645_100 Hb_007645_100 Hb_000731_270--Hb_007645_100 Hb_000731_270--Hb_006420_040 Hb_004254_090 Hb_004254_090 Hb_000731_270--Hb_004254_090 Hb_000731_270--Hb_000441_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
19.2168 19.4516 17.0523 10.5252 24.1253 23.6319
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
15.2897 13.5408 18.0891 24.7394 20.4199

CAGE analysis