Hb_002686_030

Information

Type -
Description -
Location Contig2686: 17085-21345
Sequence    

Annotation

kegg
ID rcu:RCOM_1121720
description yth domain-containing protein, putative
nr
ID XP_012070459.1
description PREDICTED: uncharacterized protein LOC105632635 isoform X1 [Jatropha curcas]
swissprot
ID Q0VCZ3
description YTH domain-containing family protein 2 OS=Bos taurus GN=YTHDF2 PE=2 SV=1
trembl
ID A0A067KXP8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02728 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_27986: 16724-16856 , PASA_asmbl_27987: 17742-18093 , PASA_asmbl_27988: 17449-21273
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002686_030 0.0 - - PREDICTED: uncharacterized protein LOC105632635 isoform X1 [Jatropha curcas]
2 Hb_000556_160 0.0563969149 - - PREDICTED: ankyrin repeat and zinc finger domain-containing protein 1 [Jatropha curcas]
3 Hb_000538_270 0.0576121022 - - PREDICTED: serine/threonine-protein kinase HT1-like [Citrus sinensis]
4 Hb_000289_060 0.0593720815 - - PREDICTED: uncharacterized protein At1g18480 [Jatropha curcas]
5 Hb_017862_020 0.0614148612 - - PREDICTED: probable inactive serine/threonine-protein kinase lvsG [Jatropha curcas]
6 Hb_007163_120 0.0639940622 - - PREDICTED: COMPASS-like H3K4 histone methylase component WDR5A [Jatropha curcas]
7 Hb_002499_040 0.0678304537 - - PREDICTED: probable serine/threonine-protein kinase GCN2 isoform X2 [Jatropha curcas]
8 Hb_001838_060 0.0697311968 transcription factor TF Family: bZIP PREDICTED: transcription factor HBP-1b(c38)-like isoform X3 [Jatropha curcas]
9 Hb_000757_060 0.071374156 - - hypothetical protein PRUPE_ppa001141mg [Prunus persica]
10 Hb_010618_010 0.0739671454 - - PREDICTED: inactive poly [ADP-ribose] polymerase RCD1 [Jatropha curcas]
11 Hb_000739_100 0.0752120617 - - ku P80 DNA helicase, putative [Ricinus communis]
12 Hb_001341_170 0.07591858 - - PREDICTED: general transcription factor IIH subunit 2 [Jatropha curcas]
13 Hb_001248_060 0.0760144522 - - conserved hypothetical protein [Ricinus communis]
14 Hb_004724_150 0.0764970578 - - expressed protein, putative [Ricinus communis]
15 Hb_167498_010 0.0766121135 - - PREDICTED: WPP domain-interacting protein 1-like [Jatropha curcas]
16 Hb_000395_130 0.0770947377 - - PREDICTED: N6-adenosine-methyltransferase MT-A70-like [Jatropha curcas]
17 Hb_002784_020 0.0771387096 - - PREDICTED: probable protein arginine N-methyltransferase 3 [Jatropha curcas]
18 Hb_001235_150 0.0796216746 - - PREDICTED: chaperone protein dnaJ 13 isoform X1 [Jatropha curcas]
19 Hb_120327_010 0.0802383302 - - PREDICTED: uncharacterized protein LOC105650959 [Jatropha curcas]
20 Hb_000225_040 0.0803201016 - - PREDICTED: translation factor GUF1 homolog, mitochondrial [Nelumbo nucifera]

Gene co-expression network

sample Hb_002686_030 Hb_002686_030 Hb_000556_160 Hb_000556_160 Hb_002686_030--Hb_000556_160 Hb_000538_270 Hb_000538_270 Hb_002686_030--Hb_000538_270 Hb_000289_060 Hb_000289_060 Hb_002686_030--Hb_000289_060 Hb_017862_020 Hb_017862_020 Hb_002686_030--Hb_017862_020 Hb_007163_120 Hb_007163_120 Hb_002686_030--Hb_007163_120 Hb_002499_040 Hb_002499_040 Hb_002686_030--Hb_002499_040 Hb_001341_170 Hb_001341_170 Hb_000556_160--Hb_001341_170 Hb_004724_150 Hb_004724_150 Hb_000556_160--Hb_004724_150 Hb_000556_160--Hb_002499_040 Hb_003294_070 Hb_003294_070 Hb_000556_160--Hb_003294_070 Hb_000185_030 Hb_000185_030 Hb_000556_160--Hb_000185_030 Hb_007416_180 Hb_007416_180 Hb_000538_270--Hb_007416_180 Hb_000757_060 Hb_000757_060 Hb_000538_270--Hb_000757_060 Hb_000538_270--Hb_000289_060 Hb_001005_190 Hb_001005_190 Hb_000538_270--Hb_001005_190 Hb_001157_040 Hb_001157_040 Hb_000538_270--Hb_001157_040 Hb_004221_020 Hb_004221_020 Hb_000289_060--Hb_004221_020 Hb_001248_060 Hb_001248_060 Hb_000289_060--Hb_001248_060 Hb_010618_010 Hb_010618_010 Hb_000289_060--Hb_010618_010 Hb_077562_050 Hb_077562_050 Hb_000289_060--Hb_077562_050 Hb_002784_020 Hb_002784_020 Hb_017862_020--Hb_002784_020 Hb_000207_180 Hb_000207_180 Hb_017862_020--Hb_000207_180 Hb_000225_040 Hb_000225_040 Hb_017862_020--Hb_000225_040 Hb_000395_130 Hb_000395_130 Hb_017862_020--Hb_000395_130 Hb_000579_230 Hb_000579_230 Hb_017862_020--Hb_000579_230 Hb_003464_090 Hb_003464_090 Hb_007163_120--Hb_003464_090 Hb_003370_030 Hb_003370_030 Hb_007163_120--Hb_003370_030 Hb_033772_030 Hb_033772_030 Hb_007163_120--Hb_033772_030 Hb_011491_010 Hb_011491_010 Hb_007163_120--Hb_011491_010 Hb_007765_110 Hb_007765_110 Hb_007163_120--Hb_007765_110 Hb_024621_040 Hb_024621_040 Hb_007163_120--Hb_024621_040 Hb_002499_040--Hb_000757_060 Hb_002499_040--Hb_000538_270 Hb_000504_140 Hb_000504_140 Hb_002499_040--Hb_000504_140 Hb_001226_040 Hb_001226_040 Hb_002499_040--Hb_001226_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.84403 9.57817 6.32171 4.63195 7.72653 9.15432
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.45386 9.17213 9.98957 10.3473 5.36572

CAGE analysis