Hb_003294_070

Information

Type -
Description -
Location Contig3294: 121701-122546
Sequence    

Annotation

kegg
ID rcu:RCOM_1714550
description hypothetical protein
nr
ID XP_002526266.1
description hypothetical protein RCOM_1714550 [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9SJU7
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1714550 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_34633: 121367-177753
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003294_070 0.0 - - hypothetical protein RCOM_1714550 [Ricinus communis]
2 Hb_000181_400 0.055358396 - - PREDICTED: probable ubiquitin-conjugating enzyme E2 25 isoform X2 [Jatropha curcas]
3 Hb_009079_030 0.0625650951 - - PREDICTED: general transcription factor IIF subunit 2 [Jatropha curcas]
4 Hb_004324_130 0.0641309025 - - polypyrimidine tract binding protein, putative [Ricinus communis]
5 Hb_165928_030 0.0670098899 - - conserved hypothetical protein [Ricinus communis]
6 Hb_000181_320 0.0674006263 - - PREDICTED: xylosyltransferase 2 [Jatropha curcas]
7 Hb_000003_320 0.0692081035 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 24 [Jatropha curcas]
8 Hb_000556_160 0.0700054145 - - PREDICTED: ankyrin repeat and zinc finger domain-containing protein 1 [Jatropha curcas]
9 Hb_002400_410 0.0709947387 - - PREDICTED: topless-related protein 1-like [Jatropha curcas]
10 Hb_000111_290 0.0713340172 - - PREDICTED: E3 ubiquitin-protein ligase KEG [Jatropha curcas]
11 Hb_007416_120 0.0714497294 - - arginine/serine-rich splicing factor, putative [Ricinus communis]
12 Hb_002078_350 0.0722916156 - - hypothetical protein B456_005G166600 [Gossypium raimondii]
13 Hb_002000_080 0.073630973 - - PREDICTED: polypyrimidine tract-binding protein homolog 3 isoform X2 [Jatropha curcas]
14 Hb_006831_140 0.0744497483 transcription factor TF Family: G2-like transcription factor, putative [Ricinus communis]
15 Hb_000015_040 0.0751741539 - - PREDICTED: uncharacterized protein LOC105647937 isoform X2 [Jatropha curcas]
16 Hb_000907_110 0.075315786 - - dihydroxyacetone kinase family protein [Populus trichocarpa]
17 Hb_002518_260 0.0758554442 - - PREDICTED: zinc finger CCCH domain-containing protein 40-like [Jatropha curcas]
18 Hb_033642_090 0.0768025637 - - conserved hypothetical protein [Ricinus communis]
19 Hb_001579_220 0.0770384381 - - PREDICTED: pantothenate kinase 1 [Jatropha curcas]
20 Hb_002471_290 0.0776933101 - - PREDICTED: vacuolar fusion protein CCZ1 homolog isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_003294_070 Hb_003294_070 Hb_000181_400 Hb_000181_400 Hb_003294_070--Hb_000181_400 Hb_009079_030 Hb_009079_030 Hb_003294_070--Hb_009079_030 Hb_004324_130 Hb_004324_130 Hb_003294_070--Hb_004324_130 Hb_165928_030 Hb_165928_030 Hb_003294_070--Hb_165928_030 Hb_000181_320 Hb_000181_320 Hb_003294_070--Hb_000181_320 Hb_000003_320 Hb_000003_320 Hb_003294_070--Hb_000003_320 Hb_000181_400--Hb_004324_130 Hb_000907_110 Hb_000907_110 Hb_000181_400--Hb_000907_110 Hb_007416_120 Hb_007416_120 Hb_000181_400--Hb_007416_120 Hb_000111_290 Hb_000111_290 Hb_000181_400--Hb_000111_290 Hb_001876_050 Hb_001876_050 Hb_000181_400--Hb_001876_050 Hb_003647_130 Hb_003647_130 Hb_009079_030--Hb_003647_130 Hb_006198_120 Hb_006198_120 Hb_009079_030--Hb_006198_120 Hb_002471_290 Hb_002471_290 Hb_009079_030--Hb_002471_290 Hb_003913_070 Hb_003913_070 Hb_009079_030--Hb_003913_070 Hb_001473_180 Hb_001473_180 Hb_009079_030--Hb_001473_180 Hb_004324_130--Hb_000111_290 Hb_004324_130--Hb_001876_050 Hb_008725_230 Hb_008725_230 Hb_004324_130--Hb_008725_230 Hb_004324_130--Hb_007416_120 Hb_006831_140 Hb_006831_140 Hb_004324_130--Hb_006831_140 Hb_002000_080 Hb_002000_080 Hb_165928_030--Hb_002000_080 Hb_165928_030--Hb_008725_230 Hb_073973_100 Hb_073973_100 Hb_165928_030--Hb_073973_100 Hb_001584_120 Hb_001584_120 Hb_165928_030--Hb_001584_120 Hb_002303_070 Hb_002303_070 Hb_165928_030--Hb_002303_070 Hb_001266_100 Hb_001266_100 Hb_000181_320--Hb_001266_100 Hb_003370_030 Hb_003370_030 Hb_000181_320--Hb_003370_030 Hb_001329_160 Hb_001329_160 Hb_000181_320--Hb_001329_160 Hb_000002_010 Hb_000002_010 Hb_000181_320--Hb_000002_010 Hb_000329_710 Hb_000329_710 Hb_000181_320--Hb_000329_710 Hb_000003_320--Hb_000181_400 Hb_002197_050 Hb_002197_050 Hb_000003_320--Hb_002197_050 Hb_000556_160 Hb_000556_160 Hb_000003_320--Hb_000556_160 Hb_002078_350 Hb_002078_350 Hb_000003_320--Hb_002078_350 Hb_000003_320--Hb_007416_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
27.6145 27.2631 16.6096 23.5508 23.0162 28.5273
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
34.243 32.7768 26.2257 43.8744 26.5305

CAGE analysis