Hb_006198_120

Information

Type -
Description -
Location Contig6198: 83971-87513
Sequence    

Annotation

kegg
ID rcu:RCOM_1721220
description GTP-binding protein-plant, putative
nr
ID XP_012085132.1
description PREDICTED: guanine nucleotide-binding protein-like NSN1 [Jatropha curcas]
swissprot
ID Q9M8Z5
description Guanine nucleotide-binding protein-like NSN1 OS=Arabidopsis thaliana GN=NSN1 PE=2 SV=1
trembl
ID A0A067JR15
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17559 PE=4 SV=1
Gene Ontology
ID GO:0005730
description guanine nucleotide-binding 3 homolog

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_51379: 83881-87255 , PASA_asmbl_51380: 87487-87589
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006198_120 0.0 - - PREDICTED: guanine nucleotide-binding protein-like NSN1 [Jatropha curcas]
2 Hb_009079_030 0.0620870347 - - PREDICTED: general transcription factor IIF subunit 2 [Jatropha curcas]
3 Hb_000538_160 0.0624047726 - - PREDICTED: RNA-binding protein 5 isoform X3 [Jatropha curcas]
4 Hb_003529_170 0.0633598182 - - PREDICTED: ATP-dependent RNA helicase DHX29 [Jatropha curcas]
5 Hb_003913_070 0.0675205417 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 30 [Populus euphratica]
6 Hb_005271_190 0.0691468536 - - dead box ATP-dependent RNA helicase, putative [Ricinus communis]
7 Hb_009486_180 0.077580582 - - unknown [Glycine max]
8 Hb_003847_130 0.0792084723 - - cytochrome C oxidase assembly protein cox11, putative [Ricinus communis]
9 Hb_001062_010 0.0795747384 - - PREDICTED: CWF19-like protein 2 [Jatropha curcas]
10 Hb_002477_090 0.0827904861 - - PREDICTED: uncharacterized protein LOC105631409 isoform X1 [Jatropha curcas]
11 Hb_003647_130 0.0838572748 - - PREDICTED: uncharacterized protein LOC105646674 [Jatropha curcas]
12 Hb_000181_320 0.0838701259 - - PREDICTED: xylosyltransferase 2 [Jatropha curcas]
13 Hb_009270_020 0.0839945673 - - PREDICTED: LOW QUALITY PROTEIN: helicase and polymerase-containing protein TEBICHI [Jatropha curcas]
14 Hb_003294_070 0.0845084801 - - hypothetical protein RCOM_1714550 [Ricinus communis]
15 Hb_001178_070 0.0848333152 - - PREDICTED: BTB/POZ domain-containing protein FBL11 [Jatropha curcas]
16 Hb_003734_010 0.0850675181 - - PREDICTED: double-strand break repair protein MRE11 [Jatropha curcas]
17 Hb_000462_170 0.085921831 - - conserved hypothetical protein [Ricinus communis]
18 Hb_017862_020 0.0866881421 - - PREDICTED: probable inactive serine/threonine-protein kinase lvsG [Jatropha curcas]
19 Hb_000900_030 0.0884373091 - - PREDICTED: WD repeat-containing protein 3 [Jatropha curcas]
20 Hb_000920_300 0.0888412824 - - PREDICTED: flowering time control protein FY isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_006198_120 Hb_006198_120 Hb_009079_030 Hb_009079_030 Hb_006198_120--Hb_009079_030 Hb_000538_160 Hb_000538_160 Hb_006198_120--Hb_000538_160 Hb_003529_170 Hb_003529_170 Hb_006198_120--Hb_003529_170 Hb_003913_070 Hb_003913_070 Hb_006198_120--Hb_003913_070 Hb_005271_190 Hb_005271_190 Hb_006198_120--Hb_005271_190 Hb_009486_180 Hb_009486_180 Hb_006198_120--Hb_009486_180 Hb_003647_130 Hb_003647_130 Hb_009079_030--Hb_003647_130 Hb_003294_070 Hb_003294_070 Hb_009079_030--Hb_003294_070 Hb_002471_290 Hb_002471_290 Hb_009079_030--Hb_002471_290 Hb_009079_030--Hb_003913_070 Hb_001473_180 Hb_001473_180 Hb_009079_030--Hb_001473_180 Hb_000538_160--Hb_005271_190 Hb_000441_120 Hb_000441_120 Hb_000538_160--Hb_000441_120 Hb_000792_010 Hb_000792_010 Hb_000538_160--Hb_000792_010 Hb_001008_120 Hb_001008_120 Hb_000538_160--Hb_001008_120 Hb_000538_160--Hb_003529_170 Hb_003529_170--Hb_005271_190 Hb_002641_030 Hb_002641_030 Hb_003529_170--Hb_002641_030 Hb_001266_100 Hb_001266_100 Hb_003529_170--Hb_001266_100 Hb_001614_060 Hb_001614_060 Hb_003529_170--Hb_001614_060 Hb_003734_010 Hb_003734_010 Hb_003913_070--Hb_003734_010 Hb_000111_290 Hb_000111_290 Hb_003913_070--Hb_000111_290 Hb_001417_030 Hb_001417_030 Hb_003913_070--Hb_001417_030 Hb_001999_310 Hb_001999_310 Hb_003913_070--Hb_001999_310 Hb_001814_030 Hb_001814_030 Hb_003913_070--Hb_001814_030 Hb_003411_040 Hb_003411_040 Hb_003913_070--Hb_003411_040 Hb_001655_060 Hb_001655_060 Hb_005271_190--Hb_001655_060 Hb_004954_070 Hb_004954_070 Hb_005271_190--Hb_004954_070 Hb_001062_010 Hb_001062_010 Hb_005271_190--Hb_001062_010 Hb_009175_020 Hb_009175_020 Hb_009486_180--Hb_009175_020 Hb_001178_070 Hb_001178_070 Hb_009486_180--Hb_001178_070 Hb_000900_030 Hb_000900_030 Hb_009486_180--Hb_000900_030 Hb_000011_230 Hb_000011_230 Hb_009486_180--Hb_000011_230 Hb_002311_290 Hb_002311_290 Hb_009486_180--Hb_002311_290 Hb_009486_180--Hb_001062_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.88303 8.05779 4.85192 5.72008 8.36152 8.61834
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.15082 8.38929 4.80708 14.0191 9.61506

CAGE analysis