Hb_002641_030

Information

Type -
Description -
Location Contig2641: 73205-85064
Sequence    

Annotation

kegg
ID rcu:RCOM_1001010
description Flowering time control protein FCA, putative
nr
ID XP_012084107.1
description PREDICTED: flowering time control protein FCA isoform X1 [Jatropha curcas]
swissprot
ID O04425
description Flowering time control protein FCA OS=Arabidopsis thaliana GN=FCA PE=1 SV=2
trembl
ID A0A067K7Z5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_19024 PE=4 SV=1
Gene Ontology
ID GO:0003676
description flowering time control protein fca isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_27642: 73429-75787 , PASA_asmbl_27644: 77604-77742 , PASA_asmbl_27646: 83370-84379 , PASA_asmbl_27647: 84412-85095
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002641_030 0.0 - - PREDICTED: flowering time control protein FCA isoform X1 [Jatropha curcas]
2 Hb_000920_300 0.0686967716 - - PREDICTED: flowering time control protein FY isoform X2 [Jatropha curcas]
3 Hb_002374_010 0.0716061894 - - PREDICTED: protein translocase subunit SECA2, chloroplastic [Jatropha curcas]
4 Hb_011537_050 0.0787971114 - - PREDICTED: protein EMSY-LIKE 3 isoform X1 [Jatropha curcas]
5 Hb_003529_170 0.0795706681 - - PREDICTED: ATP-dependent RNA helicase DHX29 [Jatropha curcas]
6 Hb_001723_020 0.0805667454 - - PREDICTED: nuclear export mediator factor Nemf [Jatropha curcas]
7 Hb_033642_090 0.0807007708 - - conserved hypothetical protein [Ricinus communis]
8 Hb_000175_100 0.0815926681 - - protein kinase, putative [Ricinus communis]
9 Hb_001329_160 0.085853685 - - PREDICTED: uncharacterized protein LOC105642679 isoform X1 [Jatropha curcas]
10 Hb_003030_060 0.0871726321 - - PREDICTED: regulation of nuclear pre-mRNA domain-containing protein 2-like [Jatropha curcas]
11 Hb_000340_400 0.0876562673 - - Histidine-containing phosphotransfer protein, putative [Ricinus communis]
12 Hb_001266_100 0.0883759891 - - PREDICTED: uncharacterized protein LOC105649131 [Jatropha curcas]
13 Hb_002784_020 0.088757673 - - PREDICTED: probable protein arginine N-methyltransferase 3 [Jatropha curcas]
14 Hb_000462_170 0.0887924155 - - conserved hypothetical protein [Ricinus communis]
15 Hb_001225_040 0.0894746069 - - PREDICTED: meiosis-specific nuclear structural protein 1 isoform X5 [Jatropha curcas]
16 Hb_006520_040 0.0896420458 - - PREDICTED: uncharacterized protein LOC105641714 isoform X2 [Jatropha curcas]
17 Hb_003913_070 0.0901565959 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 30 [Populus euphratica]
18 Hb_002477_090 0.0907402727 - - PREDICTED: uncharacterized protein LOC105631409 isoform X1 [Jatropha curcas]
19 Hb_001614_060 0.0910482558 - - hypothetical protein JCGZ_06918 [Jatropha curcas]
20 Hb_000077_320 0.0931619047 - - PREDICTED: lanC-like protein GCL2 [Jatropha curcas]

Gene co-expression network

sample Hb_002641_030 Hb_002641_030 Hb_000920_300 Hb_000920_300 Hb_002641_030--Hb_000920_300 Hb_002374_010 Hb_002374_010 Hb_002641_030--Hb_002374_010 Hb_011537_050 Hb_011537_050 Hb_002641_030--Hb_011537_050 Hb_003529_170 Hb_003529_170 Hb_002641_030--Hb_003529_170 Hb_001723_020 Hb_001723_020 Hb_002641_030--Hb_001723_020 Hb_033642_090 Hb_033642_090 Hb_002641_030--Hb_033642_090 Hb_003913_070 Hb_003913_070 Hb_000920_300--Hb_003913_070 Hb_002456_010 Hb_002456_010 Hb_000920_300--Hb_002456_010 Hb_006520_040 Hb_006520_040 Hb_000920_300--Hb_006520_040 Hb_004934_050 Hb_004934_050 Hb_000920_300--Hb_004934_050 Hb_001671_100 Hb_001671_100 Hb_000920_300--Hb_001671_100 Hb_000077_320 Hb_000077_320 Hb_002374_010--Hb_000077_320 Hb_000126_010 Hb_000126_010 Hb_002374_010--Hb_000126_010 Hb_002784_020 Hb_002784_020 Hb_002374_010--Hb_002784_020 Hb_002374_010--Hb_011537_050 Hb_106552_020 Hb_106552_020 Hb_002374_010--Hb_106552_020 Hb_000329_370 Hb_000329_370 Hb_011537_050--Hb_000329_370 Hb_001225_040 Hb_001225_040 Hb_011537_050--Hb_001225_040 Hb_001080_230 Hb_001080_230 Hb_011537_050--Hb_001080_230 Hb_003030_060 Hb_003030_060 Hb_011537_050--Hb_003030_060 Hb_000025_410 Hb_000025_410 Hb_011537_050--Hb_000025_410 Hb_000003_190 Hb_000003_190 Hb_011537_050--Hb_000003_190 Hb_006198_120 Hb_006198_120 Hb_003529_170--Hb_006198_120 Hb_005271_190 Hb_005271_190 Hb_003529_170--Hb_005271_190 Hb_000538_160 Hb_000538_160 Hb_003529_170--Hb_000538_160 Hb_001266_100 Hb_001266_100 Hb_003529_170--Hb_001266_100 Hb_001614_060 Hb_001614_060 Hb_003529_170--Hb_001614_060 Hb_007765_110 Hb_007765_110 Hb_001723_020--Hb_007765_110 Hb_000340_400 Hb_000340_400 Hb_001723_020--Hb_000340_400 Hb_001862_210 Hb_001862_210 Hb_001723_020--Hb_001862_210 Hb_007035_050 Hb_007035_050 Hb_001723_020--Hb_007035_050 Hb_003464_090 Hb_003464_090 Hb_001723_020--Hb_003464_090 Hb_002890_290 Hb_002890_290 Hb_001723_020--Hb_002890_290 Hb_001357_250 Hb_001357_250 Hb_033642_090--Hb_001357_250 Hb_000907_110 Hb_000907_110 Hb_033642_090--Hb_000907_110 Hb_033642_090--Hb_002784_020 Hb_006831_140 Hb_006831_140 Hb_033642_090--Hb_006831_140 Hb_123915_040 Hb_123915_040 Hb_033642_090--Hb_123915_040 Hb_000696_230 Hb_000696_230 Hb_033642_090--Hb_000696_230
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.23082 11.5836 7.03623 5.04398 7.17904 8.20725
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.30762 9.68181 4.76064 12.5155 7.07183

CAGE analysis