Hb_000077_320

Information

Type -
Description -
Location Contig77: 270880-273159
Sequence    

Annotation

kegg
ID rcu:RCOM_1175480
description catalytic, putative
nr
ID XP_012088306.1
description PREDICTED: lanC-like protein GCL2 [Jatropha curcas]
swissprot
ID Q8VZQ6
description LanC-like protein GCL2 OS=Arabidopsis thaliana GN=GCL2 PE=2 SV=1
trembl
ID A0A067JVZ3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25807 PE=4 SV=1
Gene Ontology
ID GO:0019898
description lanc-like protein gcl2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_57612: 270989-273154
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000077_320 0.0 - - PREDICTED: lanC-like protein GCL2 [Jatropha curcas]
2 Hb_002374_010 0.0677453366 - - PREDICTED: protein translocase subunit SECA2, chloroplastic [Jatropha curcas]
3 Hb_002784_020 0.0760407556 - - PREDICTED: probable protein arginine N-methyltransferase 3 [Jatropha curcas]
4 Hb_004994_010 0.0777048774 - - PREDICTED: COP9 signalosome complex subunit 1 [Jatropha curcas]
5 Hb_002445_100 0.0777714508 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 5 isoform X2 [Jatropha curcas]
6 Hb_000617_230 0.0795668086 - - PREDICTED: tafazzin isoform X1 [Jatropha curcas]
7 Hb_005779_010 0.0808971586 - - catalytic, putative [Ricinus communis]
8 Hb_028872_090 0.0854361363 - - PREDICTED: urease [Jatropha curcas]
9 Hb_001789_060 0.0857341599 - - calmodulin-binding heat-shock protein, putative [Ricinus communis]
10 Hb_000163_220 0.0865363564 - - hypothetical protein CISIN_1g022301mg [Citrus sinensis]
11 Hb_002400_340 0.0879304777 - - PREDICTED: probable beta-1,3-galactosyltransferase 10 [Jatropha curcas]
12 Hb_000935_010 0.0922464503 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 16 [Jatropha curcas]
13 Hb_106552_020 0.0930405012 - - PREDICTED: serine/arginine-rich splicing factor RS2Z33 isoform X1 [Jatropha curcas]
14 Hb_002641_030 0.0931619047 - - PREDICTED: flowering time control protein FCA isoform X1 [Jatropha curcas]
15 Hb_001089_110 0.0933080066 - - conserved hypothetical protein [Ricinus communis]
16 Hb_001878_050 0.093938036 - - PREDICTED: uncharacterized protein LOC105646110 isoform X3 [Jatropha curcas]
17 Hb_001456_060 0.0955796262 - - hypothetical protein JCGZ_17090 [Jatropha curcas]
18 Hb_164544_010 0.0965486517 - - PREDICTED: protein arginine N-methyltransferase 1.5 isoform X2 [Jatropha curcas]
19 Hb_000661_040 0.0970595247 - - PREDICTED: dihydroxy-acid dehydratase, chloroplastic [Jatropha curcas]
20 Hb_033642_090 0.0972272747 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_000077_320 Hb_000077_320 Hb_002374_010 Hb_002374_010 Hb_000077_320--Hb_002374_010 Hb_002784_020 Hb_002784_020 Hb_000077_320--Hb_002784_020 Hb_004994_010 Hb_004994_010 Hb_000077_320--Hb_004994_010 Hb_002445_100 Hb_002445_100 Hb_000077_320--Hb_002445_100 Hb_000617_230 Hb_000617_230 Hb_000077_320--Hb_000617_230 Hb_005779_010 Hb_005779_010 Hb_000077_320--Hb_005779_010 Hb_002641_030 Hb_002641_030 Hb_002374_010--Hb_002641_030 Hb_000126_010 Hb_000126_010 Hb_002374_010--Hb_000126_010 Hb_002374_010--Hb_002784_020 Hb_011537_050 Hb_011537_050 Hb_002374_010--Hb_011537_050 Hb_106552_020 Hb_106552_020 Hb_002374_010--Hb_106552_020 Hb_017862_020 Hb_017862_020 Hb_002784_020--Hb_017862_020 Hb_164544_010 Hb_164544_010 Hb_002784_020--Hb_164544_010 Hb_002375_010 Hb_002375_010 Hb_002784_020--Hb_002375_010 Hb_000696_230 Hb_000696_230 Hb_002784_020--Hb_000696_230 Hb_000617_180 Hb_000617_180 Hb_002784_020--Hb_000617_180 Hb_028872_090 Hb_028872_090 Hb_002784_020--Hb_028872_090 Hb_003861_050 Hb_003861_050 Hb_004994_010--Hb_003861_050 Hb_000390_230 Hb_000390_230 Hb_004994_010--Hb_000390_230 Hb_001456_060 Hb_001456_060 Hb_004994_010--Hb_001456_060 Hb_000359_040 Hb_000359_040 Hb_004994_010--Hb_000359_040 Hb_010407_050 Hb_010407_050 Hb_004994_010--Hb_010407_050 Hb_000339_040 Hb_000339_040 Hb_004994_010--Hb_000339_040 Hb_000416_110 Hb_000416_110 Hb_002445_100--Hb_000416_110 Hb_002445_100--Hb_005779_010 Hb_000005_220 Hb_000005_220 Hb_002445_100--Hb_000005_220 Hb_002445_100--Hb_000339_040 Hb_002445_100--Hb_106552_020 Hb_002889_010 Hb_002889_010 Hb_002445_100--Hb_002889_010 Hb_000189_600 Hb_000189_600 Hb_000617_230--Hb_000189_600 Hb_001430_080 Hb_001430_080 Hb_000617_230--Hb_001430_080 Hb_001878_050 Hb_001878_050 Hb_000617_230--Hb_001878_050 Hb_003835_070 Hb_003835_070 Hb_000617_230--Hb_003835_070 Hb_001279_170 Hb_001279_170 Hb_000617_230--Hb_001279_170 Hb_001009_280 Hb_001009_280 Hb_000617_230--Hb_001009_280 Hb_005779_010--Hb_004994_010 Hb_000163_220 Hb_000163_220 Hb_005779_010--Hb_000163_220 Hb_000816_250 Hb_000816_250 Hb_005779_010--Hb_000816_250 Hb_005779_010--Hb_003861_050 Hb_005779_010--Hb_000005_220
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.00828 11.5102 14.1419 6.37361 8.91988 10.3962
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.71827 11.3858 6.98402 16.1297 6.27937

CAGE analysis