Hb_000416_110

Information

Type -
Description -
Location Contig416: 89657-110838
Sequence    

Annotation

kegg
ID rcu:RCOM_1252300
description ATP binding protein, putative (EC:1.3.1.74)
nr
ID XP_012091850.1
description PREDICTED: probable LRR receptor-like serine/threonine-protein kinase RFK1 isoform X2 [Jatropha curcas]
swissprot
ID Q9FXF2
description Probable LRR receptor-like serine/threonine-protein kinase RFK1 OS=Arabidopsis thaliana GN=RKF1 PE=1 SV=1
trembl
ID B9S8F8
description ATP binding protein, putative OS=Ricinus communis GN=RCOM_1252300 PE=4 SV=1
Gene Ontology
ID GO:0004702
description probable lrr receptor-like serine threonine-protein kinase rfk1 isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_41155: 106287-106529 , PASA_asmbl_41156: 107196-107708 , PASA_asmbl_41157: 109689-110687
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000416_110 0.0 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase RFK1 isoform X2 [Jatropha curcas]
2 Hb_002445_100 0.0565281346 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 5 isoform X2 [Jatropha curcas]
3 Hb_183433_010 0.0691707829 - - PREDICTED: FAD synthase isoform X3 [Jatropha curcas]
4 Hb_001153_210 0.0714838391 - - PREDICTED: uncharacterized protein LOC105645887 isoform X1 [Jatropha curcas]
5 Hb_000005_220 0.0741957533 - - DNA ligase 1, partial [Glycine soja]
6 Hb_000789_320 0.0742330913 transcription factor TF Family: LUG PREDICTED: transcriptional corepressor LEUNIG-like isoform X1 [Jatropha curcas]
7 Hb_000866_310 0.0744192262 - - PREDICTED: neural Wiskott-Aldrich syndrome protein [Jatropha curcas]
8 Hb_007441_020 0.0754435283 - - Rab6 [Hevea brasiliensis]
9 Hb_000189_600 0.0760508648 - - PREDICTED: protein MON2 homolog isoform X1 [Jatropha curcas]
10 Hb_171900_090 0.0769130372 - - conserved hypothetical protein [Ricinus communis]
11 Hb_002986_100 0.076967573 - - PREDICTED: uncharacterized protein LOC105639686 [Jatropha curcas]
12 Hb_001225_040 0.0777269192 - - PREDICTED: meiosis-specific nuclear structural protein 1 isoform X5 [Jatropha curcas]
13 Hb_000731_220 0.0779450724 - - PREDICTED: derlin-2.2 [Jatropha curcas]
14 Hb_106552_020 0.0780149357 - - PREDICTED: serine/arginine-rich splicing factor RS2Z33 isoform X1 [Jatropha curcas]
15 Hb_004837_180 0.0809157826 transcription factor TF Family: NF-YA PREDICTED: nuclear transcription factor Y subunit A-1-like isoform X1 [Jatropha curcas]
16 Hb_004020_040 0.0818431699 - - PREDICTED: GTP-binding protein At3g49725, chloroplastic [Jatropha curcas]
17 Hb_002889_010 0.0827169539 - - ubx domain-containing, putative [Ricinus communis]
18 Hb_003159_140 0.0831451708 - - conserved hypothetical protein [Ricinus communis]
19 Hb_000339_040 0.0835918458 - - PREDICTED: SAP30-binding protein isoform X2 [Jatropha curcas]
20 Hb_001720_040 0.083923338 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_000416_110 Hb_000416_110 Hb_002445_100 Hb_002445_100 Hb_000416_110--Hb_002445_100 Hb_183433_010 Hb_183433_010 Hb_000416_110--Hb_183433_010 Hb_001153_210 Hb_001153_210 Hb_000416_110--Hb_001153_210 Hb_000005_220 Hb_000005_220 Hb_000416_110--Hb_000005_220 Hb_000789_320 Hb_000789_320 Hb_000416_110--Hb_000789_320 Hb_000866_310 Hb_000866_310 Hb_000416_110--Hb_000866_310 Hb_005779_010 Hb_005779_010 Hb_002445_100--Hb_005779_010 Hb_002445_100--Hb_000005_220 Hb_000339_040 Hb_000339_040 Hb_002445_100--Hb_000339_040 Hb_106552_020 Hb_106552_020 Hb_002445_100--Hb_106552_020 Hb_002889_010 Hb_002889_010 Hb_002445_100--Hb_002889_010 Hb_000976_140 Hb_000976_140 Hb_183433_010--Hb_000976_140 Hb_171900_090 Hb_171900_090 Hb_183433_010--Hb_171900_090 Hb_002413_010 Hb_002413_010 Hb_183433_010--Hb_002413_010 Hb_000189_600 Hb_000189_600 Hb_183433_010--Hb_000189_600 Hb_007248_030 Hb_007248_030 Hb_183433_010--Hb_007248_030 Hb_000365_230 Hb_000365_230 Hb_183433_010--Hb_000365_230 Hb_138435_010 Hb_138435_010 Hb_001153_210--Hb_138435_010 Hb_002986_100 Hb_002986_100 Hb_001153_210--Hb_002986_100 Hb_005867_070 Hb_005867_070 Hb_001153_210--Hb_005867_070 Hb_003861_050 Hb_003861_050 Hb_001153_210--Hb_003861_050 Hb_004020_040 Hb_004020_040 Hb_001153_210--Hb_004020_040 Hb_001153_210--Hb_000339_040 Hb_183612_040 Hb_183612_040 Hb_000005_220--Hb_183612_040 Hb_000035_110 Hb_000035_110 Hb_000005_220--Hb_000035_110 Hb_005337_090 Hb_005337_090 Hb_000005_220--Hb_005337_090 Hb_007441_020 Hb_007441_020 Hb_000005_220--Hb_007441_020 Hb_000005_220--Hb_005779_010 Hb_000789_320--Hb_171900_090 Hb_000789_320--Hb_000339_040 Hb_001623_270 Hb_001623_270 Hb_000789_320--Hb_001623_270 Hb_001025_090 Hb_001025_090 Hb_000789_320--Hb_001025_090 Hb_000789_320--Hb_000866_310 Hb_000789_320--Hb_001153_210 Hb_000866_310--Hb_007441_020 Hb_004994_010 Hb_004994_010 Hb_000866_310--Hb_004994_010 Hb_000260_680 Hb_000260_680 Hb_000866_310--Hb_000260_680 Hb_000866_310--Hb_002445_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.54385 2.05895 2.77335 1.54356 1.31999 1.91038
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.81086 1.86136 0.714503 1.93127 1.61703

CAGE analysis