Hb_002413_010

Information

Type -
Description -
Location Contig2413: 2731-6472
Sequence    

Annotation

kegg
ID rcu:RCOM_0927080
description Inner membrane protein yrbE, putative
nr
ID AIU41662.1
description ABC transporter family protein [Hevea brasiliensis]
swissprot
ID Q8L4R0
description Protein TRIGALACTOSYLDIACYLGLYCEROL 1, chloroplastic OS=Arabidopsis thaliana GN=TGD1 PE=1 SV=1
trembl
ID A0A097P9U0
description ABC transporter family protein OS=Hevea brasiliensis GN=ABCI14 PE=2 SV=1
Gene Ontology
ID GO:0009707
description protein trigalactosyldiacylglycerol chloroplastic-like isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_25300: 2779-3429 , PASA_asmbl_25302: 4742-6398 , PASA_asmbl_25303: 2645-6395
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002413_010 0.0 - - ABC transporter family protein [Hevea brasiliensis]
2 Hb_183433_010 0.0580886186 - - PREDICTED: FAD synthase isoform X3 [Jatropha curcas]
3 Hb_027905_020 0.0661414913 - - PREDICTED: uncharacterized protein LOC105642268 [Jatropha curcas]
4 Hb_002572_020 0.0677503808 transcription factor TF Family: SBP hypothetical protein POPTR_0005s28010g [Populus trichocarpa]
5 Hb_007248_030 0.0706523234 - - PREDICTED: uncharacterized protein LOC105633558 [Jatropha curcas]
6 Hb_000282_090 0.0744801923 - - PREDICTED: serine/threonine-protein kinase EDR1 [Jatropha curcas]
7 Hb_003912_040 0.0747582746 - - hypothetical protein CISIN_1g005153mg [Citrus sinensis]
8 Hb_000173_310 0.0759425005 - - PREDICTED: uncharacterized protein LOC105631893 isoform X1 [Jatropha curcas]
9 Hb_000130_420 0.076498495 - - PREDICTED: uncharacterized protein LOC105635728 [Jatropha curcas]
10 Hb_001481_060 0.0788552914 - - PREDICTED: E3 ubiquitin-protein ligase HOS1 isoform X1 [Jatropha curcas]
11 Hb_002893_040 0.0789499233 - - PREDICTED: carbon catabolite repressor protein 4 homolog 6 isoform X1 [Jatropha curcas]
12 Hb_004994_240 0.0791788393 - - hypothetical protein PRUPE_ppa004633mg [Prunus persica]
13 Hb_002232_480 0.079334521 - - PREDICTED: telomerase reverse transcriptase [Jatropha curcas]
14 Hb_000046_570 0.0794135996 - - hypothetical protein JCGZ_01998 [Jatropha curcas]
15 Hb_000089_210 0.0799008808 - - unknown [Medicago truncatula]
16 Hb_007062_040 0.0800780719 - - ADP-ribosylation factor GTPase-activating protein AGD2 [Morus notabilis]
17 Hb_000365_230 0.0806786906 - - PREDICTED: uncharacterized protein LOC105649056 [Jatropha curcas]
18 Hb_005730_040 0.0807070417 - - hypothetical protein PRUPE_ppa004338mg [Prunus persica]
19 Hb_002849_130 0.0807533352 - - PREDICTED: RAB6A-GEF complex partner protein 1-like [Jatropha curcas]
20 Hb_003913_020 0.0807759428 - - PREDICTED: C2 and GRAM domain-containing protein At5g50170 [Jatropha curcas]

Gene co-expression network

sample Hb_002413_010 Hb_002413_010 Hb_183433_010 Hb_183433_010 Hb_002413_010--Hb_183433_010 Hb_027905_020 Hb_027905_020 Hb_002413_010--Hb_027905_020 Hb_002572_020 Hb_002572_020 Hb_002413_010--Hb_002572_020 Hb_007248_030 Hb_007248_030 Hb_002413_010--Hb_007248_030 Hb_000282_090 Hb_000282_090 Hb_002413_010--Hb_000282_090 Hb_003912_040 Hb_003912_040 Hb_002413_010--Hb_003912_040 Hb_000976_140 Hb_000976_140 Hb_183433_010--Hb_000976_140 Hb_171900_090 Hb_171900_090 Hb_183433_010--Hb_171900_090 Hb_000189_600 Hb_000189_600 Hb_183433_010--Hb_000189_600 Hb_183433_010--Hb_007248_030 Hb_000365_230 Hb_000365_230 Hb_183433_010--Hb_000365_230 Hb_017214_040 Hb_017214_040 Hb_027905_020--Hb_017214_040 Hb_001951_200 Hb_001951_200 Hb_027905_020--Hb_001951_200 Hb_004096_240 Hb_004096_240 Hb_027905_020--Hb_004096_240 Hb_008387_010 Hb_008387_010 Hb_027905_020--Hb_008387_010 Hb_000120_210 Hb_000120_210 Hb_027905_020--Hb_000120_210 Hb_000603_160 Hb_000603_160 Hb_002572_020--Hb_000603_160 Hb_002316_140 Hb_002316_140 Hb_002572_020--Hb_002316_140 Hb_002572_020--Hb_000365_230 Hb_000173_310 Hb_000173_310 Hb_002572_020--Hb_000173_310 Hb_002572_020--Hb_183433_010 Hb_004586_060 Hb_004586_060 Hb_007248_030--Hb_004586_060 Hb_001481_060 Hb_001481_060 Hb_007248_030--Hb_001481_060 Hb_001405_210 Hb_001405_210 Hb_007248_030--Hb_001405_210 Hb_000702_090 Hb_000702_090 Hb_007248_030--Hb_000702_090 Hb_002014_010 Hb_002014_010 Hb_007248_030--Hb_002014_010 Hb_001856_180 Hb_001856_180 Hb_007248_030--Hb_001856_180 Hb_002110_160 Hb_002110_160 Hb_000282_090--Hb_002110_160 Hb_000207_200 Hb_000207_200 Hb_000282_090--Hb_000207_200 Hb_004870_050 Hb_004870_050 Hb_000282_090--Hb_004870_050 Hb_000089_210 Hb_000089_210 Hb_000282_090--Hb_000089_210 Hb_002716_060 Hb_002716_060 Hb_000282_090--Hb_002716_060 Hb_000069_130 Hb_000069_130 Hb_003912_040--Hb_000069_130 Hb_000046_570 Hb_000046_570 Hb_003912_040--Hb_000046_570 Hb_002492_010 Hb_002492_010 Hb_003912_040--Hb_002492_010 Hb_007062_040 Hb_007062_040 Hb_003912_040--Hb_007062_040 Hb_008226_090 Hb_008226_090 Hb_003912_040--Hb_008226_090 Hb_000120_910 Hb_000120_910 Hb_003912_040--Hb_000120_910
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
17 30.4947 35.9765 30.5214 19.0938 19.6151
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
19.7263 19.8282 13.378 16.5342 24.9671

CAGE analysis