Hb_000173_310

Information

Type -
Description -
Location Contig173: 260782-268323
Sequence    

Annotation

kegg
ID rcu:RCOM_0678240
description catalytic, putative
nr
ID XP_012069492.1
description PREDICTED: uncharacterized protein LOC105631893 isoform X1 [Jatropha curcas]
swissprot
ID P54567
description Uncharacterized protein YqkD OS=Bacillus subtilis (strain 168) GN=yqkD PE=4 SV=1
trembl
ID B9RST1
description Catalytic, putative OS=Ricinus communis GN=RCOM_0678240 PE=4 SV=1
Gene Ontology
ID GO:0005525
description alpha beta-hydrolases superfamily protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_16459: 261098-268080 , PASA_asmbl_16460: 261758-262037
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000173_310 0.0 - - PREDICTED: uncharacterized protein LOC105631893 isoform X1 [Jatropha curcas]
2 Hb_003213_010 0.0533362463 - - PREDICTED: uncharacterized protein LOC105641815 [Jatropha curcas]
3 Hb_001723_150 0.0639969416 - - S-adenosylmethionine-dependent methyltransferase, putative [Ricinus communis]
4 Hb_000300_260 0.0640018551 - - PREDICTED: replication factor C subunit 3 [Jatropha curcas]
5 Hb_004312_010 0.0729457788 - - PREDICTED: serine/threonine-protein kinase At5g01020 isoform X2 [Jatropha curcas]
6 Hb_002572_020 0.0753970643 transcription factor TF Family: SBP hypothetical protein POPTR_0005s28010g [Populus trichocarpa]
7 Hb_002413_010 0.0759425005 - - ABC transporter family protein [Hevea brasiliensis]
8 Hb_171900_090 0.0788876392 - - conserved hypothetical protein [Ricinus communis]
9 Hb_007254_020 0.0820067278 - - PREDICTED: uncharacterized protein LOC105629137 [Jatropha curcas]
10 Hb_000789_320 0.0825481173 transcription factor TF Family: LUG PREDICTED: transcriptional corepressor LEUNIG-like isoform X1 [Jatropha curcas]
11 Hb_000086_170 0.0827258366 - - PREDICTED: serine/threonine-protein kinase 19 [Jatropha curcas]
12 Hb_002272_050 0.0850484451 - - microsomal signal peptidase 23 kD subunit, putative [Ricinus communis]
13 Hb_000096_120 0.0862285081 - - PREDICTED: uncharacterized protein LOC105639993 [Jatropha curcas]
14 Hb_000359_040 0.0864578926 - - conserved hypothetical protein [Ricinus communis]
15 Hb_006615_050 0.0884513615 - - PREDICTED: uncharacterized protein LOC105640686 [Jatropha curcas]
16 Hb_000352_350 0.0917710495 - - PREDICTED: monothiol glutaredoxin-S7, chloroplastic [Jatropha curcas]
17 Hb_004096_180 0.0920821799 - - PREDICTED: 14-3-3-like protein A [Jatropha curcas]
18 Hb_001951_200 0.0926082956 - - PREDICTED: cold-regulated 413 inner membrane protein 1, chloroplastic-like [Jatropha curcas]
19 Hb_018790_020 0.0927367284 - - protein kinase, putative [Ricinus communis]
20 Hb_003861_060 0.0929371663 - - PREDICTED: treacle protein [Jatropha curcas]

Gene co-expression network

sample Hb_000173_310 Hb_000173_310 Hb_003213_010 Hb_003213_010 Hb_000173_310--Hb_003213_010 Hb_001723_150 Hb_001723_150 Hb_000173_310--Hb_001723_150 Hb_000300_260 Hb_000300_260 Hb_000173_310--Hb_000300_260 Hb_004312_010 Hb_004312_010 Hb_000173_310--Hb_004312_010 Hb_002572_020 Hb_002572_020 Hb_000173_310--Hb_002572_020 Hb_002413_010 Hb_002413_010 Hb_000173_310--Hb_002413_010 Hb_003213_010--Hb_001723_150 Hb_003213_010--Hb_000300_260 Hb_000649_230 Hb_000649_230 Hb_003213_010--Hb_000649_230 Hb_003213_010--Hb_004312_010 Hb_002272_050 Hb_002272_050 Hb_003213_010--Hb_002272_050 Hb_001723_150--Hb_000300_260 Hb_001723_150--Hb_002272_050 Hb_003861_060 Hb_003861_060 Hb_001723_150--Hb_003861_060 Hb_018790_020 Hb_018790_020 Hb_001723_150--Hb_018790_020 Hb_000300_260--Hb_004312_010 Hb_012565_070 Hb_012565_070 Hb_000300_260--Hb_012565_070 Hb_000086_170 Hb_000086_170 Hb_000300_260--Hb_000086_170 Hb_006132_110 Hb_006132_110 Hb_004312_010--Hb_006132_110 Hb_004312_010--Hb_000086_170 Hb_006615_050 Hb_006615_050 Hb_004312_010--Hb_006615_050 Hb_000603_160 Hb_000603_160 Hb_002572_020--Hb_000603_160 Hb_002316_140 Hb_002316_140 Hb_002572_020--Hb_002316_140 Hb_002572_020--Hb_002413_010 Hb_000365_230 Hb_000365_230 Hb_002572_020--Hb_000365_230 Hb_183433_010 Hb_183433_010 Hb_002572_020--Hb_183433_010 Hb_002413_010--Hb_183433_010 Hb_027905_020 Hb_027905_020 Hb_002413_010--Hb_027905_020 Hb_007248_030 Hb_007248_030 Hb_002413_010--Hb_007248_030 Hb_000282_090 Hb_000282_090 Hb_002413_010--Hb_000282_090 Hb_003912_040 Hb_003912_040 Hb_002413_010--Hb_003912_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
11.3674 16.2149 27.2472 18.1522 13.2098 10.7791
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
14.8034 15.6839 10.0764 8.63853 11.2653

CAGE analysis