Hb_027905_020

Information

Type -
Description -
Location Contig27905: 6229-9779
Sequence    

Annotation

kegg
ID rcu:RCOM_0852780
description hypothetical protein
nr
ID XP_012082435.1
description PREDICTED: uncharacterized protein LOC105642268 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067LL20
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_09674 PE=4 SV=1
Gene Ontology
ID GO:0000023
description seed maturation-like protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_29120: 6221-9905
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_027905_020 0.0 - - PREDICTED: uncharacterized protein LOC105642268 [Jatropha curcas]
2 Hb_002413_010 0.0661414913 - - ABC transporter family protein [Hevea brasiliensis]
3 Hb_017214_040 0.0846568006 - - PREDICTED: E3 ubiquitin-protein ligase COP1 isoform X1 [Jatropha curcas]
4 Hb_001951_200 0.0875257842 - - PREDICTED: cold-regulated 413 inner membrane protein 1, chloroplastic-like [Jatropha curcas]
5 Hb_004096_240 0.0917505691 - - PREDICTED: uncharacterized protein LOC105638702 [Jatropha curcas]
6 Hb_008387_010 0.0929631972 - - SMAD/FHA domain-containing protein isoform 3 [Theobroma cacao]
7 Hb_000120_210 0.09308094 - - PREDICTED: uncharacterized protein LOC105630189 [Jatropha curcas]
8 Hb_009476_130 0.0975400909 - - hypothetical protein VITISV_005430 [Vitis vinifera]
9 Hb_087313_010 0.0978751941 - - conserved hypothetical protein [Ricinus communis]
10 Hb_000663_020 0.0987464811 - - PREDICTED: alternative NAD(P)H-ubiquinone oxidoreductase C1, chloroplastic/mitochondrial isoform X1 [Jatropha curcas]
11 Hb_000155_170 0.0989569026 transcription factor TF Family: VOZ hypothetical protein EUTSA_v10007498mg [Eutrema salsugineum]
12 Hb_000035_090 0.0997252433 - - PREDICTED: stromal cell-derived factor 2-like protein [Jatropha curcas]
13 Hb_001776_020 0.0998181097 - - Protein kinase capable of phosphorylating tyrosine family protein [Populus trichocarpa]
14 Hb_000130_420 0.1021562256 - - PREDICTED: uncharacterized protein LOC105635728 [Jatropha curcas]
15 Hb_000003_680 0.1025064431 transcription factor TF Family: MYB-related PREDICTED: myb-like protein H [Jatropha curcas]
16 Hb_102948_010 0.1027542981 transcription factor TF Family: ARID PREDICTED: AT-rich interactive domain-containing protein 5 isoform X2 [Jatropha curcas]
17 Hb_001348_190 0.1031799984 - - PREDICTED: chlorophyllide a oxygenase, chloroplastic [Jatropha curcas]
18 Hb_003913_020 0.1032595633 - - PREDICTED: C2 and GRAM domain-containing protein At5g50170 [Jatropha curcas]
19 Hb_000179_190 0.1036893674 transcription factor TF Family: Alfin-like PREDICTED: PHD finger protein ALFIN-LIKE 4 isoform X1 [Vitis vinifera]
20 Hb_002893_040 0.1036981881 - - PREDICTED: carbon catabolite repressor protein 4 homolog 6 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_027905_020 Hb_027905_020 Hb_002413_010 Hb_002413_010 Hb_027905_020--Hb_002413_010 Hb_017214_040 Hb_017214_040 Hb_027905_020--Hb_017214_040 Hb_001951_200 Hb_001951_200 Hb_027905_020--Hb_001951_200 Hb_004096_240 Hb_004096_240 Hb_027905_020--Hb_004096_240 Hb_008387_010 Hb_008387_010 Hb_027905_020--Hb_008387_010 Hb_000120_210 Hb_000120_210 Hb_027905_020--Hb_000120_210 Hb_183433_010 Hb_183433_010 Hb_002413_010--Hb_183433_010 Hb_002572_020 Hb_002572_020 Hb_002413_010--Hb_002572_020 Hb_007248_030 Hb_007248_030 Hb_002413_010--Hb_007248_030 Hb_000282_090 Hb_000282_090 Hb_002413_010--Hb_000282_090 Hb_003912_040 Hb_003912_040 Hb_002413_010--Hb_003912_040 Hb_000179_190 Hb_000179_190 Hb_017214_040--Hb_000179_190 Hb_017214_040--Hb_008387_010 Hb_023226_070 Hb_023226_070 Hb_017214_040--Hb_023226_070 Hb_000445_060 Hb_000445_060 Hb_017214_040--Hb_000445_060 Hb_000227_270 Hb_000227_270 Hb_017214_040--Hb_000227_270 Hb_000110_350 Hb_000110_350 Hb_017214_040--Hb_000110_350 Hb_002893_040 Hb_002893_040 Hb_001951_200--Hb_002893_040 Hb_001951_200--Hb_000227_270 Hb_001951_200--Hb_002413_010 Hb_000173_310 Hb_000173_310 Hb_001951_200--Hb_000173_310 Hb_000424_060 Hb_000424_060 Hb_001951_200--Hb_000424_060 Hb_004096_240--Hb_000120_210 Hb_030414_040 Hb_030414_040 Hb_004096_240--Hb_030414_040 Hb_031284_010 Hb_031284_010 Hb_004096_240--Hb_031284_010 Hb_000375_390 Hb_000375_390 Hb_004096_240--Hb_000375_390 Hb_021943_080 Hb_021943_080 Hb_004096_240--Hb_021943_080 Hb_003186_020 Hb_003186_020 Hb_004096_240--Hb_003186_020 Hb_000457_230 Hb_000457_230 Hb_008387_010--Hb_000457_230 Hb_002811_040 Hb_002811_040 Hb_008387_010--Hb_002811_040 Hb_000205_130 Hb_000205_130 Hb_008387_010--Hb_000205_130 Hb_002615_120 Hb_002615_120 Hb_008387_010--Hb_002615_120 Hb_026234_010 Hb_026234_010 Hb_008387_010--Hb_026234_010 Hb_000120_210--Hb_030414_040 Hb_000120_210--Hb_031284_010 Hb_001153_210 Hb_001153_210 Hb_000120_210--Hb_001153_210 Hb_000111_170 Hb_000111_170 Hb_000120_210--Hb_000111_170 Hb_000120_210--Hb_021943_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
19.5789 42.3447 56.87 40.9921 22.7417 32.3604
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
27.0867 21.4697 15.3419 15.5203 38.2476

CAGE analysis