Hb_002811_040

Information

Type -
Description -
Location Contig2811: 38346-49734
Sequence    

Annotation

kegg
ID rcu:RCOM_1428570
description 5'->3' exoribonuclease, putative
nr
ID XP_002512252.1
description 5'->3' exoribonuclease, putative [Ricinus communis]
swissprot
ID Q9FQ04
description 5'-3' exoribonuclease 4 OS=Arabidopsis thaliana GN=XRN4 PE=2 SV=1
trembl
ID B9RET3
description 5'->3' exoribonuclease, putative OS=Ricinus communis GN=RCOM_1428570 PE=4 SV=1
Gene Ontology
ID GO:0003676
description 5 -3 exoribonuclease 4

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_29385: 38541-40262 , PASA_asmbl_29387: 40808-49852 , PASA_asmbl_29388: 43774-43925 , PASA_asmbl_29390: 46753-46992 , PASA_asmbl_29391: 47014-49852
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002811_040 0.0 - - 5'->3' exoribonuclease, putative [Ricinus communis]
2 Hb_000003_400 0.0566028466 - - short chain alcohol dehydrogenase, putative [Ricinus communis]
3 Hb_000529_060 0.0644527359 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 17 isoform X1 [Jatropha curcas]
4 Hb_000445_060 0.0649987022 - - PREDICTED: uncharacterized protein LOC105638996 isoform X3 [Jatropha curcas]
5 Hb_008387_010 0.0675939851 - - SMAD/FHA domain-containing protein isoform 3 [Theobroma cacao]
6 Hb_023226_070 0.0711852766 - - conserved hypothetical protein [Ricinus communis]
7 Hb_004724_370 0.0737083238 - - PREDICTED: mRNA-decapping enzyme-like protein [Jatropha curcas]
8 Hb_000661_120 0.0739206348 - - cap binding protein, putative [Ricinus communis]
9 Hb_004976_010 0.0777608924 - - hypothetical protein RCOM_1429110 [Ricinus communis]
10 Hb_001584_350 0.0778445467 - - hypothetical protein JCGZ_23178 [Jatropha curcas]
11 Hb_000205_130 0.0783992214 - - calcium ion binding protein, putative [Ricinus communis]
12 Hb_000102_050 0.0786171184 transcription factor TF Family: RB conserved hypothetical protein [Ricinus communis]
13 Hb_000996_020 0.0790718248 - - PREDICTED: RNA-binding protein NOB1 [Jatropha curcas]
14 Hb_001534_210 0.0795894198 transcription factor TF Family: PHD PREDICTED: uncharacterized protein LOC105642316 isoform X2 [Jatropha curcas]
15 Hb_000977_300 0.0797189934 - - PREDICTED: LOW QUALITY PROTEIN: probable E3 ubiquitin-protein ligase ARI8 [Malus domestica]
16 Hb_000868_120 0.0810167544 - - PREDICTED: suppressor of mec-8 and unc-52 protein homolog 2 [Jatropha curcas]
17 Hb_001674_040 0.0810191715 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 23 [Jatropha curcas]
18 Hb_000457_230 0.0814982463 - - PREDICTED: ribulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-methyltransferase, chloroplastic [Jatropha curcas]
19 Hb_000340_030 0.0815673837 - - PREDICTED: myosin heavy chain, non-muscle-like [Jatropha curcas]
20 Hb_000645_170 0.0818726489 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_002811_040 Hb_002811_040 Hb_000003_400 Hb_000003_400 Hb_002811_040--Hb_000003_400 Hb_000529_060 Hb_000529_060 Hb_002811_040--Hb_000529_060 Hb_000445_060 Hb_000445_060 Hb_002811_040--Hb_000445_060 Hb_008387_010 Hb_008387_010 Hb_002811_040--Hb_008387_010 Hb_023226_070 Hb_023226_070 Hb_002811_040--Hb_023226_070 Hb_004724_370 Hb_004724_370 Hb_002811_040--Hb_004724_370 Hb_000094_090 Hb_000094_090 Hb_000003_400--Hb_000094_090 Hb_000868_120 Hb_000868_120 Hb_000003_400--Hb_000868_120 Hb_000003_400--Hb_023226_070 Hb_010287_020 Hb_010287_020 Hb_000003_400--Hb_010287_020 Hb_000003_400--Hb_000445_060 Hb_000977_300 Hb_000977_300 Hb_000529_060--Hb_000977_300 Hb_000996_020 Hb_000996_020 Hb_000529_060--Hb_000996_020 Hb_000046_600 Hb_000046_600 Hb_000529_060--Hb_000046_600 Hb_005333_140 Hb_005333_140 Hb_000529_060--Hb_005333_140 Hb_011972_020 Hb_011972_020 Hb_000529_060--Hb_011972_020 Hb_001171_030 Hb_001171_030 Hb_000529_060--Hb_001171_030 Hb_000445_060--Hb_000996_020 Hb_000445_060--Hb_000868_120 Hb_000110_350 Hb_000110_350 Hb_000445_060--Hb_000110_350 Hb_002768_050 Hb_002768_050 Hb_000445_060--Hb_002768_050 Hb_000661_120 Hb_000661_120 Hb_000445_060--Hb_000661_120 Hb_000373_170 Hb_000373_170 Hb_000445_060--Hb_000373_170 Hb_000457_230 Hb_000457_230 Hb_008387_010--Hb_000457_230 Hb_000205_130 Hb_000205_130 Hb_008387_010--Hb_000205_130 Hb_002615_120 Hb_002615_120 Hb_008387_010--Hb_002615_120 Hb_017214_040 Hb_017214_040 Hb_008387_010--Hb_017214_040 Hb_026234_010 Hb_026234_010 Hb_008387_010--Hb_026234_010 Hb_060094_020 Hb_060094_020 Hb_023226_070--Hb_060094_020 Hb_023226_070--Hb_000094_090 Hb_001754_030 Hb_001754_030 Hb_023226_070--Hb_001754_030 Hb_023226_070--Hb_000445_060 Hb_000723_110 Hb_000723_110 Hb_023226_070--Hb_000723_110 Hb_001674_040 Hb_001674_040 Hb_004724_370--Hb_001674_040 Hb_001723_140 Hb_001723_140 Hb_004724_370--Hb_001723_140 Hb_010287_030 Hb_010287_030 Hb_004724_370--Hb_010287_030 Hb_001584_350 Hb_001584_350 Hb_004724_370--Hb_001584_350 Hb_000102_050 Hb_000102_050 Hb_004724_370--Hb_000102_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.14967 18.6319 17.0929 9.90062 8.29335 9.72112
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.03231 6.67631 3.70314 8.9028 10.7957

CAGE analysis