Hb_010287_030

Information

Type -
Description -
Location Contig10287: 21769-29404
Sequence    

Annotation

kegg
ID rcu:RCOM_1441040
description hypothetical protein
nr
ID XP_002531838.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q9LX73
description E3 UFM1-protein ligase 1 homolog OS=Arabidopsis thaliana GN=At3g46220 PE=1 SV=1
trembl
ID B9T0R9
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1441040 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_010287_030 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_004724_370 0.0682227206 - - PREDICTED: mRNA-decapping enzyme-like protein [Jatropha curcas]
3 Hb_000302_170 0.0684082402 - - PREDICTED: dnaJ protein ERDJ2A-like [Jatropha curcas]
4 Hb_008165_030 0.0707884622 - - PREDICTED: uncharacterized protein LOC105641288 [Jatropha curcas]
5 Hb_001674_040 0.0760153129 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 23 [Jatropha curcas]
6 Hb_030545_030 0.0848736593 - - PREDICTED: uncharacterized protein LOC105648743 [Jatropha curcas]
7 Hb_006573_160 0.0851066545 - - PREDICTED: dnaJ protein ERDJ2A-like [Jatropha curcas]
8 Hb_172257_010 0.0860243398 transcription factor TF Family: HMG high mobility group family protein [Populus trichocarpa]
9 Hb_000102_050 0.0865291582 transcription factor TF Family: RB conserved hypothetical protein [Ricinus communis]
10 Hb_000023_320 0.0886336627 - - conserved hypothetical protein [Ricinus communis]
11 Hb_005322_050 0.0928805254 - - hypothetical protein POPTR_0009s02400g [Populus trichocarpa]
12 Hb_011920_020 0.0929635819 - - PREDICTED: uncharacterized protein LOC105645397 [Jatropha curcas]
13 Hb_000205_130 0.0941781256 - - calcium ion binding protein, putative [Ricinus communis]
14 Hb_000994_020 0.0943043237 - - methylenetetrahydrofolate dehydrogenase, putative [Ricinus communis]
15 Hb_000260_770 0.0943471612 - - er lumen protein retaining receptor, putative [Ricinus communis]
16 Hb_152910_010 0.0946908358 - - PREDICTED: uncharacterized protein LOC105632212 [Jatropha curcas]
17 Hb_096819_010 0.095694447 - - PREDICTED: GRIP and coiled-coil domain-containing protein 2 isoform X4 [Jatropha curcas]
18 Hb_009449_060 0.0958793191 - - PREDICTED: ubiquitin-like-specific protease 1D isoform X2 [Jatropha curcas]
19 Hb_000077_120 0.0958830534 - - PREDICTED: two pore calcium channel protein 1 [Jatropha curcas]
20 Hb_001723_140 0.0970550921 - - PREDICTED: importin beta-like SAD2 homolog isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_010287_030 Hb_010287_030 Hb_004724_370 Hb_004724_370 Hb_010287_030--Hb_004724_370 Hb_000302_170 Hb_000302_170 Hb_010287_030--Hb_000302_170 Hb_008165_030 Hb_008165_030 Hb_010287_030--Hb_008165_030 Hb_001674_040 Hb_001674_040 Hb_010287_030--Hb_001674_040 Hb_030545_030 Hb_030545_030 Hb_010287_030--Hb_030545_030 Hb_006573_160 Hb_006573_160 Hb_010287_030--Hb_006573_160 Hb_004724_370--Hb_001674_040 Hb_001723_140 Hb_001723_140 Hb_004724_370--Hb_001723_140 Hb_001584_350 Hb_001584_350 Hb_004724_370--Hb_001584_350 Hb_002811_040 Hb_002811_040 Hb_004724_370--Hb_002811_040 Hb_000102_050 Hb_000102_050 Hb_004724_370--Hb_000102_050 Hb_005322_050 Hb_005322_050 Hb_000302_170--Hb_005322_050 Hb_000300_550 Hb_000300_550 Hb_000302_170--Hb_000300_550 Hb_102438_030 Hb_102438_030 Hb_000302_170--Hb_102438_030 Hb_000302_170--Hb_000102_050 Hb_152910_010 Hb_152910_010 Hb_000302_170--Hb_152910_010 Hb_002903_140 Hb_002903_140 Hb_008165_030--Hb_002903_140 Hb_008165_030--Hb_030545_030 Hb_008165_030--Hb_001674_040 Hb_096819_010 Hb_096819_010 Hb_008165_030--Hb_096819_010 Hb_004032_230 Hb_004032_230 Hb_008165_030--Hb_004032_230 Hb_001674_040--Hb_001723_140 Hb_011920_020 Hb_011920_020 Hb_001674_040--Hb_011920_020 Hb_001674_040--Hb_001584_350 Hb_010661_020 Hb_010661_020 Hb_001674_040--Hb_010661_020 Hb_030545_030--Hb_002903_140 Hb_030545_030--Hb_102438_030 Hb_000227_310 Hb_000227_310 Hb_030545_030--Hb_000227_310 Hb_007017_070 Hb_007017_070 Hb_030545_030--Hb_007017_070 Hb_030545_030--Hb_096819_010 Hb_001153_050 Hb_001153_050 Hb_006573_160--Hb_001153_050 Hb_011972_020 Hb_011972_020 Hb_006573_160--Hb_011972_020 Hb_002814_110 Hb_002814_110 Hb_006573_160--Hb_002814_110 Hb_098209_010 Hb_098209_010 Hb_006573_160--Hb_098209_010 Hb_006573_160--Hb_000302_170 Hb_006573_160--Hb_000102_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
21.2149 29.2665 35.6874 17.7605 17.5082 18.8266
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.59963 6.23534 4.77603 17.5986 12.7534

CAGE analysis