Hb_011920_020

Information

Type -
Description -
Location Contig11920: 37029-40484
Sequence    

Annotation

kegg
ID tcc:TCM_007755
description Uncharacterized protein isoform 1
nr
ID XP_012086386.1
description PREDICTED: uncharacterized protein LOC105645397 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JPH6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_22901 PE=4 SV=1
Gene Ontology
ID GO:0005794
description atp-dependent dna ligase ykou

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_05681: 37036-37220 , PASA_asmbl_05682: 37407-39989 , PASA_asmbl_05684: 38525-38878
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_011920_020 0.0 - - PREDICTED: uncharacterized protein LOC105645397 [Jatropha curcas]
2 Hb_155159_010 0.0587633906 - - PREDICTED: RNA polymerase II C-terminal domain phosphatase-like 1 [Jatropha curcas]
3 Hb_001674_040 0.069214467 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 23 [Jatropha curcas]
4 Hb_001221_090 0.073850905 - - PREDICTED: uncharacterized protein LOC105640211 isoform X1 [Jatropha curcas]
5 Hb_010661_020 0.0741589459 - - PREDICTED: uncharacterized protein LOC105630767 isoform X1 [Jatropha curcas]
6 Hb_096819_010 0.0748749339 - - PREDICTED: GRIP and coiled-coil domain-containing protein 2 isoform X4 [Jatropha curcas]
7 Hb_002092_070 0.0761279619 - - PREDICTED: aluminum-activated malate transporter 9-like [Jatropha curcas]
8 Hb_005539_040 0.0763875286 - - PREDICTED: RNA-binding protein 25 isoform X3 [Jatropha curcas]
9 Hb_007283_030 0.0770297322 - - PREDICTED: pre-mRNA-processing protein 40C-like [Malus domestica]
10 Hb_001231_090 0.0777070242 - - PREDICTED: CCR4-NOT transcription complex subunit 10 isoform X1 [Jatropha curcas]
11 Hb_009449_090 0.079269449 - - PREDICTED: RNA-binding protein 25 isoform X1 [Jatropha curcas]
12 Hb_000958_150 0.079791274 - - Actin, putative [Ricinus communis]
13 Hb_002282_060 0.0799122647 transcription factor TF Family: bZIP DNA binding protein, putative [Ricinus communis]
14 Hb_008165_030 0.0813482813 - - PREDICTED: uncharacterized protein LOC105641288 [Jatropha curcas]
15 Hb_001723_140 0.0835183402 - - PREDICTED: importin beta-like SAD2 homolog isoform X2 [Jatropha curcas]
16 Hb_000184_150 0.0852239949 - - PREDICTED: U-box domain-containing protein 15 [Jatropha curcas]
17 Hb_002903_140 0.0862925413 - - PREDICTED: uncharacterized protein LOC105649513 [Jatropha curcas]
18 Hb_004724_370 0.0867016097 - - PREDICTED: mRNA-decapping enzyme-like protein [Jatropha curcas]
19 Hb_000302_170 0.0875144843 - - PREDICTED: dnaJ protein ERDJ2A-like [Jatropha curcas]
20 Hb_002045_250 0.0876413831 - - PREDICTED: peptidyl-prolyl cis-trans isomerase CYP63 isoform X3 [Jatropha curcas]

Gene co-expression network

sample Hb_011920_020 Hb_011920_020 Hb_155159_010 Hb_155159_010 Hb_011920_020--Hb_155159_010 Hb_001674_040 Hb_001674_040 Hb_011920_020--Hb_001674_040 Hb_001221_090 Hb_001221_090 Hb_011920_020--Hb_001221_090 Hb_010661_020 Hb_010661_020 Hb_011920_020--Hb_010661_020 Hb_096819_010 Hb_096819_010 Hb_011920_020--Hb_096819_010 Hb_002092_070 Hb_002092_070 Hb_011920_020--Hb_002092_070 Hb_002282_060 Hb_002282_060 Hb_155159_010--Hb_002282_060 Hb_007283_030 Hb_007283_030 Hb_155159_010--Hb_007283_030 Hb_000703_130 Hb_000703_130 Hb_155159_010--Hb_000703_130 Hb_001231_090 Hb_001231_090 Hb_155159_010--Hb_001231_090 Hb_155159_010--Hb_010661_020 Hb_004724_370 Hb_004724_370 Hb_001674_040--Hb_004724_370 Hb_008165_030 Hb_008165_030 Hb_001674_040--Hb_008165_030 Hb_001723_140 Hb_001723_140 Hb_001674_040--Hb_001723_140 Hb_001584_350 Hb_001584_350 Hb_001674_040--Hb_001584_350 Hb_001674_040--Hb_010661_020 Hb_003142_040 Hb_003142_040 Hb_001221_090--Hb_003142_040 Hb_001221_090--Hb_002092_070 Hb_004429_010 Hb_004429_010 Hb_001221_090--Hb_004429_010 Hb_011202_030 Hb_011202_030 Hb_001221_090--Hb_011202_030 Hb_001904_030 Hb_001904_030 Hb_001221_090--Hb_001904_030 Hb_002461_020 Hb_002461_020 Hb_001221_090--Hb_002461_020 Hb_005542_050 Hb_005542_050 Hb_010661_020--Hb_005542_050 Hb_000926_010 Hb_000926_010 Hb_010661_020--Hb_000926_010 Hb_010661_020--Hb_002282_060 Hb_010661_020--Hb_001231_090 Hb_005539_040 Hb_005539_040 Hb_010661_020--Hb_005539_040 Hb_030545_030 Hb_030545_030 Hb_096819_010--Hb_030545_030 Hb_002903_140 Hb_002903_140 Hb_096819_010--Hb_002903_140 Hb_096819_010--Hb_008165_030 Hb_000958_150 Hb_000958_150 Hb_096819_010--Hb_000958_150 Hb_002902_020 Hb_002902_020 Hb_096819_010--Hb_002902_020 Hb_002045_250 Hb_002045_250 Hb_002092_070--Hb_002045_250 Hb_002092_070--Hb_004429_010 Hb_002284_170 Hb_002284_170 Hb_002092_070--Hb_002284_170 Hb_009252_050 Hb_009252_050 Hb_002092_070--Hb_009252_050 Hb_002092_070--Hb_000958_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.63551 12.8961 8.42852 6.2255 6.71013 7.28241
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.84855 2.37686 2.05188 6.59105 6.14794

CAGE analysis