Hb_002092_070

Information

Type -
Description -
Location Contig2092: 70444-79112
Sequence    

Annotation

kegg
ID rcu:RCOM_0149450
description hypothetical protein
nr
ID XP_012092994.1
description PREDICTED: aluminum-activated malate transporter 9-like [Jatropha curcas]
swissprot
ID Q9LS46
description Aluminum-activated malate transporter 9 OS=Arabidopsis thaliana GN=ALMT9 PE=2 SV=1
trembl
ID A0A067JJE8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_05874 PE=4 SV=1
Gene Ontology
ID GO:0015743
description aluminum-activated malate transporter 9

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_21631: 70818-79139 , PASA_asmbl_21632: 74781-75199 , PASA_asmbl_21633: 76739-77062
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002092_070 0.0 - - PREDICTED: aluminum-activated malate transporter 9-like [Jatropha curcas]
2 Hb_002045_250 0.0477133454 - - PREDICTED: peptidyl-prolyl cis-trans isomerase CYP63 isoform X3 [Jatropha curcas]
3 Hb_004429_010 0.0532140253 - - calcineurin-like phosphoesterase [Manihot esculenta]
4 Hb_002284_170 0.056820367 - - PREDICTED: serine/threonine-protein kinase/endoribonuclease IRE1b [Jatropha curcas]
5 Hb_001221_090 0.0570834864 - - PREDICTED: uncharacterized protein LOC105640211 isoform X1 [Jatropha curcas]
6 Hb_009252_050 0.067664529 - - protein binding protein, putative [Ricinus communis]
7 Hb_000958_150 0.0683162223 - - Actin, putative [Ricinus communis]
8 Hb_000334_130 0.0731846563 - - hypothetical protein JCGZ_16781 [Jatropha curcas]
9 Hb_000302_170 0.0741005228 - - PREDICTED: dnaJ protein ERDJ2A-like [Jatropha curcas]
10 Hb_002027_280 0.0750184896 - - PREDICTED: sister-chromatid cohesion protein 3 [Jatropha curcas]
11 Hb_000046_600 0.0754071948 - - PREDICTED: cullin-1-like [Jatropha curcas]
12 Hb_011920_020 0.0761279619 - - PREDICTED: uncharacterized protein LOC105645397 [Jatropha curcas]
13 Hb_015026_100 0.0779249275 - - PREDICTED: transmembrane protein 184C-like [Jatropha curcas]
14 Hb_000529_060 0.0786322752 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 17 isoform X1 [Jatropha curcas]
15 Hb_000635_200 0.0804036104 rubber biosynthesis Gene Name: SRPP5 PREDICTED: REF/SRPP-like protein At1g67360 [Jatropha curcas]
16 Hb_000260_780 0.0810709829 - - PREDICTED: ERAD-associated E3 ubiquitin-protein ligase HRD1B-like [Jatropha curcas]
17 Hb_003124_160 0.0814667296 - - dynamin, putative [Ricinus communis]
18 Hb_001904_030 0.0823160786 - - PREDICTED: importin-5 [Jatropha curcas]
19 Hb_000580_030 0.0826303459 - - PREDICTED: probable protein S-acyltransferase 14 [Jatropha curcas]
20 Hb_001259_110 0.0834106283 - - PREDICTED: calmodulin-binding receptor-like cytoplasmic kinase 3 [Jatropha curcas]

Gene co-expression network

sample Hb_002092_070 Hb_002092_070 Hb_002045_250 Hb_002045_250 Hb_002092_070--Hb_002045_250 Hb_004429_010 Hb_004429_010 Hb_002092_070--Hb_004429_010 Hb_002284_170 Hb_002284_170 Hb_002092_070--Hb_002284_170 Hb_001221_090 Hb_001221_090 Hb_002092_070--Hb_001221_090 Hb_009252_050 Hb_009252_050 Hb_002092_070--Hb_009252_050 Hb_000958_150 Hb_000958_150 Hb_002092_070--Hb_000958_150 Hb_002045_250--Hb_004429_010 Hb_001723_140 Hb_001723_140 Hb_002045_250--Hb_001723_140 Hb_002045_250--Hb_009252_050 Hb_000046_600 Hb_000046_600 Hb_002045_250--Hb_000046_600 Hb_000529_060 Hb_000529_060 Hb_002045_250--Hb_000529_060 Hb_002027_280 Hb_002027_280 Hb_004429_010--Hb_002027_280 Hb_004429_010--Hb_009252_050 Hb_003124_160 Hb_003124_160 Hb_004429_010--Hb_003124_160 Hb_004429_010--Hb_002284_170 Hb_004429_010--Hb_001221_090 Hb_002284_170--Hb_000958_150 Hb_000949_020 Hb_000949_020 Hb_002284_170--Hb_000949_020 Hb_000700_060 Hb_000700_060 Hb_002284_170--Hb_000700_060 Hb_002284_170--Hb_009252_050 Hb_003142_040 Hb_003142_040 Hb_001221_090--Hb_003142_040 Hb_011202_030 Hb_011202_030 Hb_001221_090--Hb_011202_030 Hb_001904_030 Hb_001904_030 Hb_001221_090--Hb_001904_030 Hb_002461_020 Hb_002461_020 Hb_001221_090--Hb_002461_020 Hb_001085_110 Hb_001085_110 Hb_009252_050--Hb_001085_110 Hb_134362_010 Hb_134362_010 Hb_009252_050--Hb_134362_010 Hb_000479_240 Hb_000479_240 Hb_009252_050--Hb_000479_240 Hb_004109_370 Hb_004109_370 Hb_009252_050--Hb_004109_370 Hb_004204_130 Hb_004204_130 Hb_009252_050--Hb_004204_130 Hb_056987_010 Hb_056987_010 Hb_000958_150--Hb_056987_010 Hb_102438_030 Hb_102438_030 Hb_000958_150--Hb_102438_030 Hb_030545_030 Hb_030545_030 Hb_000958_150--Hb_030545_030 Hb_096819_010 Hb_096819_010 Hb_000958_150--Hb_096819_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
10.185 22.0558 14.8619 16.3149 13.6162 12.0479
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.59195 3.76773 4.32073 13.6681 11.5803

CAGE analysis