Hb_000046_600

Information

Type -
Description -
Location Contig46: 463739-469910
Sequence    

Annotation

kegg
ID rcu:RCOM_0680540
description Cullin-1, putative
nr
ID XP_012069366.1
description PREDICTED: cullin-1-like [Jatropha curcas]
swissprot
ID Q94AH6
description Cullin-1 OS=Arabidopsis thaliana GN=CUL1 PE=1 SV=1
trembl
ID A0A067KUU7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_01994 PE=3 SV=1
Gene Ontology
ID GO:0031461
description cullin-like protein1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_43675: 463746-469900 , PASA_asmbl_43676: 465152-465847
cDNA
(Sanger)
(ID:Location)		 004_B07.ab1: 467533-469900 , 023_B13.ab1: 467796-469900

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000046_600 0.0 - - PREDICTED: cullin-1-like [Jatropha curcas]
2 Hb_005403_010 0.0526356054 - - PREDICTED: exocyst complex component EXO70B1-like [Jatropha curcas]
3 Hb_000529_060 0.0528366469 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 17 isoform X1 [Jatropha curcas]
4 Hb_023344_140 0.0591886147 - - PREDICTED: WD repeat-containing protein 70 [Jatropha curcas]
5 Hb_005333_140 0.0606584489 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 16 isoform X1 [Jatropha curcas]
6 Hb_000994_020 0.0662735827 - - methylenetetrahydrofolate dehydrogenase, putative [Ricinus communis]
7 Hb_000977_300 0.0675782244 - - PREDICTED: LOW QUALITY PROTEIN: probable E3 ubiquitin-protein ligase ARI8 [Malus domestica]
8 Hb_002045_250 0.068900137 - - PREDICTED: peptidyl-prolyl cis-trans isomerase CYP63 isoform X3 [Jatropha curcas]
9 Hb_170077_010 0.0694684934 - - PREDICTED: probable ADP-ribosylation factor GTPase-activating protein AGD14 isoform X1 [Jatropha curcas]
10 Hb_015026_100 0.0701600312 - - PREDICTED: transmembrane protein 184C-like [Jatropha curcas]
11 Hb_000260_760 0.0716933544 - - PREDICTED: protein EXPORTIN 1A [Jatropha curcas]
12 Hb_000996_020 0.0729117189 - - PREDICTED: RNA-binding protein NOB1 [Jatropha curcas]
13 Hb_000300_550 0.0734393236 - - PREDICTED: uncharacterized protein At1g04910-like [Jatropha curcas]
14 Hb_002461_020 0.0735520846 - - PREDICTED: uncharacterized protein LOC105642649 isoform X2 [Jatropha curcas]
15 Hb_027654_020 0.0744126053 - - PREDICTED: LIMR family protein At5g01460 [Jatropha curcas]
16 Hb_002092_070 0.0754071948 - - PREDICTED: aluminum-activated malate transporter 9-like [Jatropha curcas]
17 Hb_006022_010 0.0764415166 - - PREDICTED: uncharacterized protein LOC105628883 [Jatropha curcas]
18 Hb_016461_020 0.0773583692 - - conserved hypothetical protein [Ricinus communis]
19 Hb_000336_020 0.0785336455 - - PREDICTED: phospholipid-transporting ATPase 2 [Jatropha curcas]
20 Hb_000020_160 0.0796926902 - - PREDICTED: E3 ubiquitin-protein ligase RING1-like [Gossypium raimondii]

Gene co-expression network

sample Hb_000046_600 Hb_000046_600 Hb_005403_010 Hb_005403_010 Hb_000046_600--Hb_005403_010 Hb_000529_060 Hb_000529_060 Hb_000046_600--Hb_000529_060 Hb_023344_140 Hb_023344_140 Hb_000046_600--Hb_023344_140 Hb_005333_140 Hb_005333_140 Hb_000046_600--Hb_005333_140 Hb_000994_020 Hb_000994_020 Hb_000046_600--Hb_000994_020 Hb_000977_300 Hb_000977_300 Hb_000046_600--Hb_000977_300 Hb_170077_010 Hb_170077_010 Hb_005403_010--Hb_170077_010 Hb_005403_010--Hb_023344_140 Hb_000640_190 Hb_000640_190 Hb_005403_010--Hb_000640_190 Hb_000110_350 Hb_000110_350 Hb_005403_010--Hb_000110_350 Hb_000260_760 Hb_000260_760 Hb_005403_010--Hb_000260_760 Hb_000529_060--Hb_000977_300 Hb_000996_020 Hb_000996_020 Hb_000529_060--Hb_000996_020 Hb_000529_060--Hb_005333_140 Hb_011972_020 Hb_011972_020 Hb_000529_060--Hb_011972_020 Hb_001171_030 Hb_001171_030 Hb_000529_060--Hb_001171_030 Hb_023344_140--Hb_170077_010 Hb_023344_140--Hb_005333_140 Hb_000358_220 Hb_000358_220 Hb_023344_140--Hb_000358_220 Hb_023344_140--Hb_000996_020 Hb_002461_020 Hb_002461_020 Hb_005333_140--Hb_002461_020 Hb_005333_140--Hb_000996_020 Hb_000189_630 Hb_000189_630 Hb_005333_140--Hb_000189_630 Hb_015026_100 Hb_015026_100 Hb_000994_020--Hb_015026_100 Hb_000260_770 Hb_000260_770 Hb_000994_020--Hb_000260_770 Hb_006501_010 Hb_006501_010 Hb_000994_020--Hb_006501_010 Hb_000302_170 Hb_000302_170 Hb_000994_020--Hb_000302_170 Hb_000300_550 Hb_000300_550 Hb_000994_020--Hb_000300_550 Hb_004517_020 Hb_004517_020 Hb_000977_300--Hb_004517_020 Hb_000120_910 Hb_000120_910 Hb_000977_300--Hb_000120_910 Hb_000977_300--Hb_001171_030 Hb_000977_300--Hb_000189_630 Hb_000977_300--Hb_000110_350
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
31.2888 65.2942 71.4332 59.2228 37.9222 39.7009
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
15.9635 16.2054 20.928 48.4131 45.6788

CAGE analysis