Hb_015026_100

Information

Type -
Description -
Location Contig15026: 64407-67093
Sequence    

Annotation

kegg
ID rcu:RCOM_1062980
description hypothetical protein
nr
ID XP_012091517.1
description PREDICTED: transmembrane protein 184C-like [Jatropha curcas]
swissprot
ID Q54WM0
description Transmembrane protein 184 homolog DDB_G0279555 OS=Dictyostelium discoideum GN=tmem184C PE=3 SV=1
trembl
ID B9S610
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1062980 PE=4 SV=1
Gene Ontology
ID GO:0005783
description transmembrane protein 184c-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_12601: 64416-67079
cDNA
(Sanger)
(ID:Location)		 018_K23.ab1: 65417-67077 , 021_I10.ab1: 65426-67077 , 042_H09.ab1: 65366-67077

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_015026_100 0.0 - - PREDICTED: transmembrane protein 184C-like [Jatropha curcas]
2 Hb_000994_020 0.0629207447 - - methylenetetrahydrofolate dehydrogenase, putative [Ricinus communis]
3 Hb_000046_600 0.0701600312 - - PREDICTED: cullin-1-like [Jatropha curcas]
4 Hb_002092_070 0.0779249275 - - PREDICTED: aluminum-activated malate transporter 9-like [Jatropha curcas]
5 Hb_002045_250 0.0816148125 - - PREDICTED: peptidyl-prolyl cis-trans isomerase CYP63 isoform X3 [Jatropha curcas]
6 Hb_008397_010 0.0819458303 - - PREDICTED: uncharacterized protein LOC105640192 isoform X2 [Jatropha curcas]
7 Hb_006501_010 0.0853305695 - - PREDICTED: dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit STT3A isoform X1 [Populus euphratica]
8 Hb_000640_070 0.0896960301 - - PREDICTED: vacuolar protein sorting-associated protein 51 homolog [Jatropha curcas]
9 Hb_006022_010 0.090252414 - - PREDICTED: uncharacterized protein LOC105628883 [Jatropha curcas]
10 Hb_000302_170 0.0907985843 - - PREDICTED: dnaJ protein ERDJ2A-like [Jatropha curcas]
11 Hb_005322_050 0.0910981308 - - hypothetical protein POPTR_0009s02400g [Populus trichocarpa]
12 Hb_000320_290 0.0914518504 - - PREDICTED: putative lactoylglutathione lyase [Jatropha curcas]
13 Hb_005723_020 0.091541747 - - conserved hypothetical protein [Ricinus communis]
14 Hb_001194_020 0.0915612542 - - microtubule associated protein xmap215, putative [Ricinus communis]
15 Hb_000300_550 0.0917643994 - - PREDICTED: uncharacterized protein At1g04910-like [Jatropha curcas]
16 Hb_000630_030 0.093108218 - - PREDICTED: E3 ubiquitin-protein ligase RGLG2 isoform X1 [Populus euphratica]
17 Hb_073973_150 0.0948571629 - - PREDICTED: aminoacylase-1 isoform X1 [Jatropha curcas]
18 Hb_007800_020 0.0963165594 - - PREDICTED: probable arabinosyltransferase ARAD1 isoform X1 [Jatropha curcas]
19 Hb_027654_020 0.0970630193 - - PREDICTED: LIMR family protein At5g01460 [Jatropha curcas]
20 Hb_000205_280 0.0979879561 - - PREDICTED: inositol phosphorylceramide glucuronosyltransferase 1 [Jatropha curcas]

Gene co-expression network

sample Hb_015026_100 Hb_015026_100 Hb_000994_020 Hb_000994_020 Hb_015026_100--Hb_000994_020 Hb_000046_600 Hb_000046_600 Hb_015026_100--Hb_000046_600 Hb_002092_070 Hb_002092_070 Hb_015026_100--Hb_002092_070 Hb_002045_250 Hb_002045_250 Hb_015026_100--Hb_002045_250 Hb_008397_010 Hb_008397_010 Hb_015026_100--Hb_008397_010 Hb_006501_010 Hb_006501_010 Hb_015026_100--Hb_006501_010 Hb_000994_020--Hb_000046_600 Hb_000260_770 Hb_000260_770 Hb_000994_020--Hb_000260_770 Hb_000994_020--Hb_006501_010 Hb_000302_170 Hb_000302_170 Hb_000994_020--Hb_000302_170 Hb_000300_550 Hb_000300_550 Hb_000994_020--Hb_000300_550 Hb_005403_010 Hb_005403_010 Hb_000046_600--Hb_005403_010 Hb_000529_060 Hb_000529_060 Hb_000046_600--Hb_000529_060 Hb_023344_140 Hb_023344_140 Hb_000046_600--Hb_023344_140 Hb_005333_140 Hb_005333_140 Hb_000046_600--Hb_005333_140 Hb_000977_300 Hb_000977_300 Hb_000046_600--Hb_000977_300 Hb_002092_070--Hb_002045_250 Hb_004429_010 Hb_004429_010 Hb_002092_070--Hb_004429_010 Hb_002284_170 Hb_002284_170 Hb_002092_070--Hb_002284_170 Hb_001221_090 Hb_001221_090 Hb_002092_070--Hb_001221_090 Hb_009252_050 Hb_009252_050 Hb_002092_070--Hb_009252_050 Hb_000958_150 Hb_000958_150 Hb_002092_070--Hb_000958_150 Hb_002045_250--Hb_004429_010 Hb_001723_140 Hb_001723_140 Hb_002045_250--Hb_001723_140 Hb_002045_250--Hb_009252_050 Hb_002045_250--Hb_000046_600 Hb_002045_250--Hb_000529_060 Hb_000640_070 Hb_000640_070 Hb_008397_010--Hb_000640_070 Hb_001194_020 Hb_001194_020 Hb_008397_010--Hb_001194_020 Hb_000336_020 Hb_000336_020 Hb_008397_010--Hb_000336_020 Hb_000284_230 Hb_000284_230 Hb_008397_010--Hb_000284_230 Hb_073973_150 Hb_073973_150 Hb_008397_010--Hb_073973_150 Hb_007894_160 Hb_007894_160 Hb_008397_010--Hb_007894_160 Hb_000082_010 Hb_000082_010 Hb_006501_010--Hb_000082_010 Hb_005723_020 Hb_005723_020 Hb_006501_010--Hb_005723_020 Hb_007413_040 Hb_007413_040 Hb_006501_010--Hb_007413_040 Hb_002686_040 Hb_002686_040 Hb_006501_010--Hb_002686_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
43.2751 80.4595 98.7578 92.3852 70.3512 65.6879
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
25.3126 14.572 21.8834 73.3821 53.3331

CAGE analysis