Hb_009252_050

Information

Type -
Description -
Location Contig9252: 50688-55296
Sequence    

Annotation

kegg
ID rcu:RCOM_1510800
description protein binding protein, putative
nr
ID XP_002511411.1
description protein binding protein, putative [Ricinus communis]
swissprot
ID Q8GYT9
description E3 ubiquitin-protein ligase SIS3 OS=Arabidopsis thaliana GN=SIS3 PE=2 SV=2
trembl
ID B9RB36
description Protein binding protein, putative OS=Ricinus communis GN=RCOM_1510800 PE=4 SV=1
Gene Ontology
ID GO:0004842
description e3 ubiquitin-protein ligase sis3-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_62623: 50679-55031 , PASA_asmbl_62624: 51379-51742
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_009252_050 0.0 - - protein binding protein, putative [Ricinus communis]
2 Hb_001085_110 0.0485692608 - - T6D22.2 [Arabidopsis thaliana]
3 Hb_134362_010 0.0532521189 - - PREDICTED: FAS-associated factor 2 [Jatropha curcas]
4 Hb_004429_010 0.0540776285 - - calcineurin-like phosphoesterase [Manihot esculenta]
5 Hb_000479_240 0.0561173012 - - PREDICTED: probable ubiquitin conjugation factor E4 isoform X2 [Jatropha curcas]
6 Hb_004109_370 0.0619675259 - - transferase, transferring glycosyl groups, putative [Ricinus communis]
7 Hb_004204_130 0.0631382996 - - PREDICTED: uncharacterized protein LOC103930912 [Pyrus x bretschneideri]
8 Hb_002284_170 0.0650766333 - - PREDICTED: serine/threonine-protein kinase/endoribonuclease IRE1b [Jatropha curcas]
9 Hb_003124_160 0.0654405622 - - dynamin, putative [Ricinus communis]
10 Hb_002092_070 0.067664529 - - PREDICTED: aluminum-activated malate transporter 9-like [Jatropha curcas]
11 Hb_002045_250 0.06875339 - - PREDICTED: peptidyl-prolyl cis-trans isomerase CYP63 isoform X3 [Jatropha curcas]
12 Hb_002027_280 0.0695474915 - - PREDICTED: sister-chromatid cohesion protein 3 [Jatropha curcas]
13 Hb_004645_070 0.0705995408 - - PREDICTED: beta-1,3-galactosyltransferase 15 [Jatropha curcas]
14 Hb_001673_050 0.0711843205 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 8-like isoform X1 [Jatropha curcas]
15 Hb_002849_170 0.0711885783 - - PREDICTED: uncharacterized protein LOC105642955 isoform X1 [Jatropha curcas]
16 Hb_000139_130 0.0716225462 - - PREDICTED: chloride channel protein CLC-d isoform X1 [Jatropha curcas]
17 Hb_000243_300 0.0748532404 - - catalytic, putative [Ricinus communis]
18 Hb_001904_030 0.0748575977 - - PREDICTED: importin-5 [Jatropha curcas]
19 Hb_008948_140 0.0758135087 - - PREDICTED: nuclear pore complex protein NUP205 [Jatropha curcas]
20 Hb_000336_020 0.0758341886 - - PREDICTED: phospholipid-transporting ATPase 2 [Jatropha curcas]

Gene co-expression network

sample Hb_009252_050 Hb_009252_050 Hb_001085_110 Hb_001085_110 Hb_009252_050--Hb_001085_110 Hb_134362_010 Hb_134362_010 Hb_009252_050--Hb_134362_010 Hb_004429_010 Hb_004429_010 Hb_009252_050--Hb_004429_010 Hb_000479_240 Hb_000479_240 Hb_009252_050--Hb_000479_240 Hb_004109_370 Hb_004109_370 Hb_009252_050--Hb_004109_370 Hb_004204_130 Hb_004204_130 Hb_009252_050--Hb_004204_130 Hb_001085_110--Hb_004109_370 Hb_000243_300 Hb_000243_300 Hb_001085_110--Hb_000243_300 Hb_003124_160 Hb_003124_160 Hb_001085_110--Hb_003124_160 Hb_007657_020 Hb_007657_020 Hb_001085_110--Hb_007657_020 Hb_008397_010 Hb_008397_010 Hb_001085_110--Hb_008397_010 Hb_001668_010 Hb_001668_010 Hb_134362_010--Hb_001668_010 Hb_001673_050 Hb_001673_050 Hb_134362_010--Hb_001673_050 Hb_002849_170 Hb_002849_170 Hb_134362_010--Hb_002849_170 Hb_000352_070 Hb_000352_070 Hb_134362_010--Hb_000352_070 Hb_134362_010--Hb_004429_010 Hb_002027_280 Hb_002027_280 Hb_004429_010--Hb_002027_280 Hb_002092_070 Hb_002092_070 Hb_004429_010--Hb_002092_070 Hb_004429_010--Hb_003124_160 Hb_002284_170 Hb_002284_170 Hb_004429_010--Hb_002284_170 Hb_001221_090 Hb_001221_090 Hb_004429_010--Hb_001221_090 Hb_005568_040 Hb_005568_040 Hb_000479_240--Hb_005568_040 Hb_001904_030 Hb_001904_030 Hb_000479_240--Hb_001904_030 Hb_000008_240 Hb_000008_240 Hb_000479_240--Hb_000008_240 Hb_004645_070 Hb_004645_070 Hb_000479_240--Hb_004645_070 Hb_003604_050 Hb_003604_050 Hb_000479_240--Hb_003604_050 Hb_140049_080 Hb_140049_080 Hb_004109_370--Hb_140049_080 Hb_061878_010 Hb_061878_010 Hb_004109_370--Hb_061878_010 Hb_001552_030 Hb_001552_030 Hb_004109_370--Hb_001552_030 Hb_000139_130 Hb_000139_130 Hb_004109_370--Hb_000139_130 Hb_031641_010 Hb_031641_010 Hb_004204_130--Hb_031641_010 Hb_004204_130--Hb_004429_010 Hb_002045_250 Hb_002045_250 Hb_004204_130--Hb_002045_250 Hb_004204_130--Hb_002849_170 Hb_133702_020 Hb_133702_020 Hb_004204_130--Hb_133702_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.35925 9.31114 5.9219 8.39189 6.94258 6.3732
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.90455 3.08289 2.60291 7.12343 6.07071

CAGE analysis