Hb_061878_010

Information

Type -
Description -
Location Contig61878: 232-2125
Sequence    

Annotation

kegg
ID rcu:RCOM_0818850
description methylmalonate-semialdehyde dehydrogenase, putative (EC:1.2.1.27)
nr
ID KDO44164.1
description hypothetical protein CISIN_1g0094072mg, partial [Citrus sinensis]
swissprot
ID Q0WM29
description Methylmalonate-semialdehyde dehydrogenase [acylating], mitochondrial OS=Arabidopsis thaliana GN=ALDH6B2 PE=2 SV=2
trembl
ID A0A067DRH8
description Uncharacterized protein (Fragment) OS=Citrus sinensis GN=CISIN_1g0094072mg PE=4 SV=1
Gene Ontology
ID GO:0004491
description methylmalonate-semialdehyde dehydrogenase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_061878_010 0.0 - - hypothetical protein CISIN_1g0094072mg, partial [Citrus sinensis]
2 Hb_140049_080 0.0455170054 - - PREDICTED: probable RNA helicase SDE3 [Jatropha curcas]
3 Hb_006355_090 0.0584348576 desease resistance Gene Name: AAA PREDICTED: 26S proteasome regulatory subunit 4 homolog A [Jatropha curcas]
4 Hb_004109_370 0.0658738585 - - transferase, transferring glycosyl groups, putative [Ricinus communis]
5 Hb_000139_130 0.0680619508 - - PREDICTED: chloride channel protein CLC-d isoform X1 [Jatropha curcas]
6 Hb_012092_060 0.0703178293 - - PREDICTED: KH domain-containing protein At4g18375 [Jatropha curcas]
7 Hb_000037_220 0.0720095948 - - PREDICTED: vacuolar protein-sorting-associated protein 11 homolog [Jatropha curcas]
8 Hb_007426_130 0.0750349588 - - PREDICTED: KH domain-containing protein At4g18375-like [Jatropha curcas]
9 Hb_086287_010 0.0780448605 - - PREDICTED: aminoacylase-1 isoform X1 [Jatropha curcas]
10 Hb_009615_170 0.0785921973 - - PREDICTED: sphingoid long-chain bases kinase 1 isoform X1 [Jatropha curcas]
11 Hb_005568_040 0.0792362748 - - PREDICTED: uncharacterized protein LOC105628163 isoform X2 [Jatropha curcas]
12 Hb_001318_020 0.0794779878 - - HAT dimerization domain-containing protein isoform 2 [Theobroma cacao]
13 Hb_011287_050 0.0802737608 - - PREDICTED: uncharacterized protein LOC105644786 [Jatropha curcas]
14 Hb_004645_070 0.0809710209 - - PREDICTED: beta-1,3-galactosyltransferase 15 [Jatropha curcas]
15 Hb_003912_070 0.0817493562 - - PREDICTED: nuclear pore complex protein NUP85 [Jatropha curcas]
16 Hb_001377_160 0.0820824802 - - PREDICTED: protein SDE2 homolog [Jatropha curcas]
17 Hb_008103_020 0.0832312253 - - hypothetical protein POPTR_0003s20310g [Populus trichocarpa]
18 Hb_178968_050 0.0845969464 - - PREDICTED: probable serine incorporator [Jatropha curcas]
19 Hb_001033_050 0.0846304878 - - PREDICTED: acetylornithine deacetylase [Jatropha curcas]
20 Hb_004129_070 0.085240807 - - PREDICTED: conserved oligomeric Golgi complex subunit 5 [Jatropha curcas]

Gene co-expression network

sample Hb_061878_010 Hb_061878_010 Hb_140049_080 Hb_140049_080 Hb_061878_010--Hb_140049_080 Hb_006355_090 Hb_006355_090 Hb_061878_010--Hb_006355_090 Hb_004109_370 Hb_004109_370 Hb_061878_010--Hb_004109_370 Hb_000139_130 Hb_000139_130 Hb_061878_010--Hb_000139_130 Hb_012092_060 Hb_012092_060 Hb_061878_010--Hb_012092_060 Hb_000037_220 Hb_000037_220 Hb_061878_010--Hb_000037_220 Hb_140049_080--Hb_006355_090 Hb_140049_080--Hb_004109_370 Hb_140049_080--Hb_000037_220 Hb_009615_170 Hb_009615_170 Hb_140049_080--Hb_009615_170 Hb_001318_020 Hb_001318_020 Hb_140049_080--Hb_001318_020 Hb_000369_130 Hb_000369_130 Hb_006355_090--Hb_000369_130 Hb_006355_090--Hb_001318_020 Hb_002815_030 Hb_002815_030 Hb_006355_090--Hb_002815_030 Hb_000089_120 Hb_000089_120 Hb_006355_090--Hb_000089_120 Hb_001085_110 Hb_001085_110 Hb_004109_370--Hb_001085_110 Hb_009252_050 Hb_009252_050 Hb_004109_370--Hb_009252_050 Hb_001552_030 Hb_001552_030 Hb_004109_370--Hb_001552_030 Hb_004109_370--Hb_000139_130 Hb_001033_050 Hb_001033_050 Hb_000139_130--Hb_001033_050 Hb_004109_230 Hb_004109_230 Hb_000139_130--Hb_004109_230 Hb_004668_060 Hb_004668_060 Hb_000139_130--Hb_004668_060 Hb_001377_160 Hb_001377_160 Hb_000139_130--Hb_001377_160 Hb_003912_070 Hb_003912_070 Hb_012092_060--Hb_003912_070 Hb_000537_050 Hb_000537_050 Hb_012092_060--Hb_000537_050 Hb_005568_040 Hb_005568_040 Hb_012092_060--Hb_005568_040 Hb_012286_040 Hb_012286_040 Hb_012092_060--Hb_012286_040 Hb_000003_100 Hb_000003_100 Hb_012092_060--Hb_000003_100 Hb_011287_050 Hb_011287_050 Hb_012092_060--Hb_011287_050 Hb_005563_060 Hb_005563_060 Hb_000037_220--Hb_005563_060 Hb_000556_220 Hb_000556_220 Hb_000037_220--Hb_000556_220 Hb_000037_220--Hb_000003_100 Hb_000094_310 Hb_000094_310 Hb_000037_220--Hb_000094_310 Hb_041327_010 Hb_041327_010 Hb_000037_220--Hb_041327_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
19.5628 27.8951 15.3336 23.3662 18.6519 25.1384
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
9.73361 6.38987 13.1429 26.2926 14.5043

CAGE analysis