Hb_006355_090

Information

Type desease resistance
Description Gene Name: AAA
Location Contig6355: 115503-119388
Sequence    

Annotation

kegg
ID gmx:100798835
description 26S proteasome regulatory subunit 4 homolog A-like
nr
ID XP_012085169.1
description PREDICTED: 26S proteasome regulatory subunit 4 homolog A [Jatropha curcas]
swissprot
ID Q9SZD4
description 26S proteasome regulatory subunit 4 homolog A OS=Arabidopsis thaliana GN=RPT2A PE=1 SV=1
trembl
ID A0A067JRB4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17585 PE=3 SV=1
Gene Ontology
ID GO:0005737
description 26s proteasome regulatory subunit 4 homolog a

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_51955: 115566-119455
cDNA
(Sanger)
(ID:Location)		 011_B22.ab1: 117692-119455

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006355_090 0.0 desease resistance Gene Name: AAA PREDICTED: 26S proteasome regulatory subunit 4 homolog A [Jatropha curcas]
2 Hb_140049_080 0.0536862077 - - PREDICTED: probable RNA helicase SDE3 [Jatropha curcas]
3 Hb_061878_010 0.0584348576 - - hypothetical protein CISIN_1g0094072mg, partial [Citrus sinensis]
4 Hb_000369_130 0.0597570373 - - PREDICTED: H/ACA ribonucleoprotein complex subunit 4 [Jatropha curcas]
5 Hb_001318_020 0.0687742502 - - HAT dimerization domain-containing protein isoform 2 [Theobroma cacao]
6 Hb_002815_030 0.0696060655 - - hypothetical protein CISIN_1g0095162mg, partial [Citrus sinensis]
7 Hb_000089_120 0.0700095587 - - WD-repeat protein, putative [Ricinus communis]
8 Hb_000139_130 0.0748766837 - - PREDICTED: chloride channel protein CLC-d isoform X1 [Jatropha curcas]
9 Hb_001377_160 0.0755784944 - - PREDICTED: protein SDE2 homolog [Jatropha curcas]
10 Hb_009615_170 0.0761294446 - - PREDICTED: sphingoid long-chain bases kinase 1 isoform X1 [Jatropha curcas]
11 Hb_000261_240 0.0789090146 - - RecName: Full=Elongation factor 1-alpha; Short=EF-1-alpha [Manihot esculenta]
12 Hb_004676_010 0.0802699751 - - PREDICTED: pentatricopeptide repeat-containing protein At1g80270, mitochondrial-like [Jatropha curcas]
13 Hb_001821_090 0.0805064078 transcription factor TF Family: CAMTA PREDICTED: calmodulin-binding transcription activator 2 [Jatropha curcas]
14 Hb_004109_370 0.0806021008 - - transferase, transferring glycosyl groups, putative [Ricinus communis]
15 Hb_000579_230 0.0807594041 - - PREDICTED: bifunctional nuclease 1 [Jatropha curcas]
16 Hb_002107_070 0.0810944088 - - hypothetical protein RCOM_1598630 [Ricinus communis]
17 Hb_003498_120 0.082223338 - - hypothetical protein POPTR_0015s12430g, partial [Populus trichocarpa]
18 Hb_001946_340 0.0825754035 - - PREDICTED: mediator of RNA polymerase II transcription subunit 17-like isoform X1 [Jatropha curcas]
19 Hb_007426_130 0.0829233599 - - PREDICTED: KH domain-containing protein At4g18375-like [Jatropha curcas]
20 Hb_012395_140 0.0830540353 - - PREDICTED: uncharacterized protein LOC105638411 [Jatropha curcas]

Gene co-expression network

sample Hb_006355_090 Hb_006355_090 Hb_140049_080 Hb_140049_080 Hb_006355_090--Hb_140049_080 Hb_061878_010 Hb_061878_010 Hb_006355_090--Hb_061878_010 Hb_000369_130 Hb_000369_130 Hb_006355_090--Hb_000369_130 Hb_001318_020 Hb_001318_020 Hb_006355_090--Hb_001318_020 Hb_002815_030 Hb_002815_030 Hb_006355_090--Hb_002815_030 Hb_000089_120 Hb_000089_120 Hb_006355_090--Hb_000089_120 Hb_140049_080--Hb_061878_010 Hb_004109_370 Hb_004109_370 Hb_140049_080--Hb_004109_370 Hb_000037_220 Hb_000037_220 Hb_140049_080--Hb_000037_220 Hb_009615_170 Hb_009615_170 Hb_140049_080--Hb_009615_170 Hb_140049_080--Hb_001318_020 Hb_061878_010--Hb_004109_370 Hb_000139_130 Hb_000139_130 Hb_061878_010--Hb_000139_130 Hb_012092_060 Hb_012092_060 Hb_061878_010--Hb_012092_060 Hb_061878_010--Hb_000037_220 Hb_002107_070 Hb_002107_070 Hb_000369_130--Hb_002107_070 Hb_003058_060 Hb_003058_060 Hb_000369_130--Hb_003058_060 Hb_001821_090 Hb_001821_090 Hb_000369_130--Hb_001821_090 Hb_005143_030 Hb_005143_030 Hb_000369_130--Hb_005143_030 Hb_001621_130 Hb_001621_130 Hb_000369_130--Hb_001621_130 Hb_001318_020--Hb_009615_170 Hb_001377_160 Hb_001377_160 Hb_001318_020--Hb_001377_160 Hb_000130_020 Hb_000130_020 Hb_001318_020--Hb_000130_020 Hb_001318_020--Hb_061878_010 Hb_001343_040 Hb_001343_040 Hb_002815_030--Hb_001343_040 Hb_000008_290 Hb_000008_290 Hb_002815_030--Hb_000008_290 Hb_000579_230 Hb_000579_230 Hb_002815_030--Hb_000579_230 Hb_012395_140 Hb_012395_140 Hb_002815_030--Hb_012395_140 Hb_000395_070 Hb_000395_070 Hb_002815_030--Hb_000395_070 Hb_000592_030 Hb_000592_030 Hb_002815_030--Hb_000592_030 Hb_116349_070 Hb_116349_070 Hb_000089_120--Hb_116349_070 Hb_000261_240 Hb_000261_240 Hb_000089_120--Hb_000261_240 Hb_007657_020 Hb_007657_020 Hb_000089_120--Hb_007657_020 Hb_005588_090 Hb_005588_090 Hb_000089_120--Hb_005588_090 Hb_002784_020 Hb_002784_020 Hb_000089_120--Hb_002784_020 Hb_000398_080 Hb_000398_080 Hb_000089_120--Hb_000398_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
69.5495 78.4863 43.2425 72.2849 63.7623 83.2654
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
35.7919 35.1298 42.3665 94.7349 44.4741

CAGE analysis