Hb_000592_030

Information

Type -
Description -
Location Contig592: 76746-92748
Sequence    

Annotation

kegg
ID vvi:100853969
description uncharacterized LOC100853969
nr
ID XP_010663675.1
description PREDICTED: uncharacterized protein LOC100853969 isoform X1 [Vitis vinifera]
swissprot
ID -
description -
trembl
ID D7SJ96
description Putative uncharacterized protein OS=Vitis vinifera GN=VIT_17s0000g02520 PE=4 SV=1
Gene Ontology
ID GO:0005737
description fkbp-type peptidyl-prolyl cis-trans isomerase 5 isoform 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_50283: 76793-92748 , PASA_asmbl_50284: 82401-82855 , PASA_asmbl_50285: 76793-92496 , PASA_asmbl_50286: 92445-96578 , PASA_asmbl_50287: 81815-82139
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000592_030 0.0 - - PREDICTED: uncharacterized protein LOC100853969 isoform X1 [Vitis vinifera]
2 Hb_000613_050 0.0544481694 - - PREDICTED: uncharacterized protein LOC105641544 isoform X2 [Jatropha curcas]
3 Hb_020378_030 0.0544560042 - - PREDICTED: protein transport protein SEC31 homolog B [Jatropha curcas]
4 Hb_002815_030 0.055278616 - - hypothetical protein CISIN_1g0095162mg, partial [Citrus sinensis]
5 Hb_000537_050 0.0559860902 - - AP-2 complex subunit beta-1, putative [Ricinus communis]
6 Hb_001343_040 0.0577399241 - - PREDICTED: uncharacterized protein LOC105638555 [Jatropha curcas]
7 Hb_001473_180 0.0578019446 - - glutathione reductase [Hevea brasiliensis]
8 Hb_000008_290 0.0579106403 - - PREDICTED: protein SAND [Jatropha curcas]
9 Hb_003411_040 0.0591561217 - - unnamed protein product [Coffea canephora]
10 Hb_001814_030 0.0612608587 - - PREDICTED: uncharacterized protein LOC105650634 [Jatropha curcas]
11 Hb_004586_220 0.0613334632 - - PREDICTED: WD and tetratricopeptide repeats protein 1 isoform X3 [Jatropha curcas]
12 Hb_000590_050 0.0613855126 - - PREDICTED: protein-tyrosine-phosphatase MKP1 [Jatropha curcas]
13 Hb_010174_040 0.0652439715 - - PREDICTED: T-complex protein 1 subunit epsilon [Jatropha curcas]
14 Hb_001655_030 0.0660802407 transcription factor TF Family: SNF2 PREDICTED: SNF2 domain-containing protein CLASSY 3 isoform X2 [Jatropha curcas]
15 Hb_000872_010 0.0668355019 - - PREDICTED: putative ubiquitin-conjugating enzyme E2 38 [Jatropha curcas]
16 Hb_000617_180 0.067009998 - - hypothetical protein B456_013G125900 [Gossypium raimondii]
17 Hb_009270_020 0.0671355132 - - PREDICTED: LOW QUALITY PROTEIN: helicase and polymerase-containing protein TEBICHI [Jatropha curcas]
18 Hb_004676_010 0.0682179661 - - PREDICTED: pentatricopeptide repeat-containing protein At1g80270, mitochondrial-like [Jatropha curcas]
19 Hb_009296_040 0.0712565874 - - hypothetical protein L484_007435 [Morus notabilis]
20 Hb_007803_050 0.0714898381 - - PREDICTED: uncharacterized protein LOC105129170 isoform X2 [Populus euphratica]

Gene co-expression network

sample Hb_000592_030 Hb_000592_030 Hb_000613_050 Hb_000613_050 Hb_000592_030--Hb_000613_050 Hb_020378_030 Hb_020378_030 Hb_000592_030--Hb_020378_030 Hb_002815_030 Hb_002815_030 Hb_000592_030--Hb_002815_030 Hb_000537_050 Hb_000537_050 Hb_000592_030--Hb_000537_050 Hb_001343_040 Hb_001343_040 Hb_000592_030--Hb_001343_040 Hb_001473_180 Hb_001473_180 Hb_000592_030--Hb_001473_180 Hb_000613_050--Hb_001343_040 Hb_000008_290 Hb_000008_290 Hb_000613_050--Hb_000008_290 Hb_002213_070 Hb_002213_070 Hb_000613_050--Hb_002213_070 Hb_001199_100 Hb_001199_100 Hb_000613_050--Hb_001199_100 Hb_000613_050--Hb_002815_030 Hb_004586_220 Hb_004586_220 Hb_020378_030--Hb_004586_220 Hb_000590_050 Hb_000590_050 Hb_020378_030--Hb_000590_050 Hb_000441_220 Hb_000441_220 Hb_020378_030--Hb_000441_220 Hb_001814_030 Hb_001814_030 Hb_020378_030--Hb_001814_030 Hb_002732_040 Hb_002732_040 Hb_020378_030--Hb_002732_040 Hb_002815_030--Hb_001343_040 Hb_002815_030--Hb_000008_290 Hb_000579_230 Hb_000579_230 Hb_002815_030--Hb_000579_230 Hb_012395_140 Hb_012395_140 Hb_002815_030--Hb_012395_140 Hb_000395_070 Hb_000395_070 Hb_002815_030--Hb_000395_070 Hb_000537_050--Hb_004586_220 Hb_000537_050--Hb_020378_030 Hb_012092_060 Hb_012092_060 Hb_000537_050--Hb_012092_060 Hb_009296_040 Hb_009296_040 Hb_000537_050--Hb_009296_040 Hb_002890_130 Hb_002890_130 Hb_000537_050--Hb_002890_130 Hb_001343_040--Hb_000395_070 Hb_001343_040--Hb_001814_030 Hb_001343_040--Hb_012395_140 Hb_002600_150 Hb_002600_150 Hb_001473_180--Hb_002600_150 Hb_009270_020 Hb_009270_020 Hb_001473_180--Hb_009270_020 Hb_009079_030 Hb_009079_030 Hb_001473_180--Hb_009079_030 Hb_000617_180 Hb_000617_180 Hb_001473_180--Hb_000617_180 Hb_001473_180--Hb_002815_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
25.8352 28.1551 22.0777 30.0545 30.3491 41.1898
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
24.6813 18.5104 32.0624 45.6684 33.8008

CAGE analysis