Hb_002213_070

Information

Type -
Description -
Location Contig2213: 107639-128978
Sequence    

Annotation

kegg
ID rcu:RCOM_0867610
description AP-1 complex subunit gamma-2, putative
nr
ID XP_006385152.1
description epsilon-adaptin family protein [Populus trichocarpa]
swissprot
ID Q8L7A9
description AP-4 complex subunit epsilon OS=Arabidopsis thaliana GN=At1g31730 PE=1 SV=1
trembl
ID U5GHH1
description Epsilon-adaptin family protein OS=Populus trichocarpa GN=POPTR_0004s24340g PE=4 SV=1
Gene Ontology
ID GO:0005829
description ap-4 complex subunit epsilon

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_22828: 107756-128874 , PASA_asmbl_22829: 111414-128868
cDNA
(Sanger)
(ID:Location)		 051_M13.ab1: 111414-114794

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002213_070 0.0 - - epsilon-adaptin family protein [Populus trichocarpa]
2 Hb_000127_040 0.0552505558 - - PREDICTED: protein S-acyltransferase 8-like [Jatropha curcas]
3 Hb_001492_020 0.0575567032 - - PREDICTED: diacylglycerol kinase 3-like [Jatropha curcas]
4 Hb_000613_050 0.0604067583 - - PREDICTED: uncharacterized protein LOC105641544 isoform X2 [Jatropha curcas]
5 Hb_002110_190 0.0621629173 - - PREDICTED: pentatricopeptide repeat-containing protein At5g27460 [Jatropha curcas]
6 Hb_000789_310 0.062572695 - - PREDICTED: E3 ubiquitin-protein ligase PRT1 [Jatropha curcas]
7 Hb_000890_210 0.0651412508 - - PREDICTED: serine/threonine-protein kinase PBS1 isoform X1 [Eucalyptus grandis]
8 Hb_007576_110 0.0684512784 - - Endoplasmic reticulum vesicle transporter protein [Theobroma cacao]
9 Hb_012022_090 0.0706855677 - - PREDICTED: LIMR family protein At5g01460 [Gossypium raimondii]
10 Hb_000590_050 0.0713637958 - - PREDICTED: protein-tyrosine-phosphatase MKP1 [Jatropha curcas]
11 Hb_007638_030 0.0723346422 - - PREDICTED: phosphatidylinositol 3,4,5-trisphosphate 3-phosphatase and dual-specificity protein phosphatase PTEN [Jatropha curcas]
12 Hb_004324_130 0.0730055443 - - polypyrimidine tract binding protein, putative [Ricinus communis]
13 Hb_002675_070 0.0732854181 - - PREDICTED: protein CASC3 [Jatropha curcas]
14 Hb_000592_030 0.074411723 - - PREDICTED: uncharacterized protein LOC100853969 isoform X1 [Vitis vinifera]
15 Hb_007479_040 0.0746267197 - - conserved hypothetical protein [Ricinus communis]
16 Hb_105328_020 0.0750238312 - - PREDICTED: phosphatidylinositol 3,4,5-trisphosphate 3-phosphatase and dual-specificity protein phosphatase PTEN [Jatropha curcas]
17 Hb_002235_170 0.075193797 - - hypothetical protein CISIN_1g010208mg [Citrus sinensis]
18 Hb_000923_010 0.0753449434 - - PREDICTED: C2 and GRAM domain-containing protein At1g03370 isoform X1 [Jatropha curcas]
19 Hb_001635_090 0.0755839928 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 7 isoform X1 [Populus euphratica]
20 Hb_011037_030 0.0759959613 - - PREDICTED: uncharacterized protein LOC105641407 [Jatropha curcas]

Gene co-expression network

sample Hb_002213_070 Hb_002213_070 Hb_000127_040 Hb_000127_040 Hb_002213_070--Hb_000127_040 Hb_001492_020 Hb_001492_020 Hb_002213_070--Hb_001492_020 Hb_000613_050 Hb_000613_050 Hb_002213_070--Hb_000613_050 Hb_002110_190 Hb_002110_190 Hb_002213_070--Hb_002110_190 Hb_000789_310 Hb_000789_310 Hb_002213_070--Hb_000789_310 Hb_000890_210 Hb_000890_210 Hb_002213_070--Hb_000890_210 Hb_004935_030 Hb_004935_030 Hb_000127_040--Hb_004935_030 Hb_007803_050 Hb_007803_050 Hb_000127_040--Hb_007803_050 Hb_000457_260 Hb_000457_260 Hb_000127_040--Hb_000457_260 Hb_032050_040 Hb_032050_040 Hb_000127_040--Hb_032050_040 Hb_054865_150 Hb_054865_150 Hb_000127_040--Hb_054865_150 Hb_002235_170 Hb_002235_170 Hb_001492_020--Hb_002235_170 Hb_000640_120 Hb_000640_120 Hb_001492_020--Hb_000640_120 Hb_007336_010 Hb_007336_010 Hb_001492_020--Hb_007336_010 Hb_000120_060 Hb_000120_060 Hb_001492_020--Hb_000120_060 Hb_001314_010 Hb_001314_010 Hb_001492_020--Hb_001314_010 Hb_001343_040 Hb_001343_040 Hb_000613_050--Hb_001343_040 Hb_000592_030 Hb_000592_030 Hb_000613_050--Hb_000592_030 Hb_000008_290 Hb_000008_290 Hb_000613_050--Hb_000008_290 Hb_001199_100 Hb_001199_100 Hb_000613_050--Hb_001199_100 Hb_002815_030 Hb_002815_030 Hb_000613_050--Hb_002815_030 Hb_007479_040 Hb_007479_040 Hb_002110_190--Hb_007479_040 Hb_004567_090 Hb_004567_090 Hb_002110_190--Hb_004567_090 Hb_011037_030 Hb_011037_030 Hb_002110_190--Hb_011037_030 Hb_026198_070 Hb_026198_070 Hb_002110_190--Hb_026198_070 Hb_002110_190--Hb_054865_150 Hb_003680_120 Hb_003680_120 Hb_002110_190--Hb_003680_120 Hb_007576_110 Hb_007576_110 Hb_000789_310--Hb_007576_110 Hb_000030_190 Hb_000030_190 Hb_000789_310--Hb_000030_190 Hb_033642_030 Hb_033642_030 Hb_000789_310--Hb_033642_030 Hb_000462_060 Hb_000462_060 Hb_000789_310--Hb_000462_060 Hb_000345_380 Hb_000345_380 Hb_000789_310--Hb_000345_380 Hb_001409_020 Hb_001409_020 Hb_000789_310--Hb_001409_020 Hb_000107_490 Hb_000107_490 Hb_000890_210--Hb_000107_490 Hb_001341_170 Hb_001341_170 Hb_000890_210--Hb_001341_170 Hb_000083_120 Hb_000083_120 Hb_000890_210--Hb_000083_120 Hb_004117_310 Hb_004117_310 Hb_000890_210--Hb_004117_310 Hb_000245_040 Hb_000245_040 Hb_000890_210--Hb_000245_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
11.6217 14.8952 9.11751 16.8932 15.4511 20.5788
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
16.8439 10.3239 15.9238 17.5504 12.2446

CAGE analysis