Hb_000120_060

Information

Type -
Description -
Location Contig120: 46630-48957
Sequence    

Annotation

kegg
ID pop:POPTR_0009s05120g
description POPTRDRAFT_723047; peptidyl-prolyl cis-trans isomerase family protein
nr
ID XP_011032116.1
description PREDICTED: peptidyl-prolyl cis-trans isomerase CYP20-1 [Populus euphratica]
swissprot
ID Q8LDP4
description Peptidyl-prolyl cis-trans isomerase CYP19-4 OS=Arabidopsis thaliana GN=CYP19-4 PE=1 SV=2
trembl
ID A9PAQ9
description Peptidyl-prolyl cis-trans isomerase OS=Populus trichocarpa GN=POPTR_0009s05120g PE=2 SV=1
Gene Ontology
ID GO:0003755
description peptidyl-prolyl cis-trans isomerase cyp20-1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_06049: 46560-48766
cDNA
(Sanger)
(ID:Location)		 002_I16.ab1: 46677-48759 , 005_E23.ab1: 46681-48755 , 014_P15.ab1: 46676-48735 , 024_A06.ab1: 46735-48759 , 043_B12.ab1: 46701-48766 , 043_G01.ab1: 46710-48766 , 052_G15.ab1: 46675-48735

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000120_060 0.0 - - PREDICTED: peptidyl-prolyl cis-trans isomerase CYP20-1 [Populus euphratica]
2 Hb_003693_070 0.054736454 - - PREDICTED: S-(hydroxymethyl)glutathione dehydrogenase [Jatropha curcas]
3 Hb_000270_490 0.0660314295 - - betaine aldehyde dehydrogenase 1 [Jatropha curcas]
4 Hb_010142_030 0.0660695091 - - PREDICTED: isoamylase 3, chloroplastic isoform X2 [Jatropha curcas]
5 Hb_000808_280 0.0700759628 - - conserved hypothetical protein [Ricinus communis]
6 Hb_001492_020 0.0741854846 - - PREDICTED: diacylglycerol kinase 3-like [Jatropha curcas]
7 Hb_002783_240 0.0755913215 - - PREDICTED: putative ER lumen protein-retaining receptor C28H8.4 [Jatropha curcas]
8 Hb_000603_150 0.078301165 - - PREDICTED: guanine nucleotide-binding protein alpha-1 subunit [Jatropha curcas]
9 Hb_011930_160 0.0787835267 - - PREDICTED: tetratricopeptide repeat protein 38-like [Jatropha curcas]
10 Hb_001946_010 0.0788704525 - - CBL-interacting serine/threonine-protein kinase, putative [Ricinus communis]
11 Hb_000120_670 0.0804912533 - - PREDICTED: SRSF protein kinase 2-like [Jatropha curcas]
12 Hb_014834_050 0.0807821945 - - conserved hypothetical protein [Ricinus communis]
13 Hb_073973_100 0.0811947514 - - PREDICTED: uncharacterized protein LOC105638910 [Jatropha curcas]
14 Hb_003376_330 0.0812503524 - - PREDICTED: gamma carbonic anhydrase 1, mitochondrial [Eucalyptus grandis]
15 Hb_001635_090 0.0816237687 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 7 isoform X1 [Populus euphratica]
16 Hb_000205_300 0.0818580372 - - PREDICTED: uncharacterized protein LOC105647767 [Jatropha curcas]
17 Hb_003813_130 0.0836962481 - - PREDICTED: plastidic glucose transporter 4 [Jatropha curcas]
18 Hb_002213_070 0.0849790508 - - epsilon-adaptin family protein [Populus trichocarpa]
19 Hb_000019_030 0.0863812282 - - PREDICTED: V-type proton ATPase subunit C [Gossypium raimondii]
20 Hb_026198_070 0.0865889438 - - PREDICTED: uncharacterized membrane protein At4g09580 [Jatropha curcas]

Gene co-expression network

sample Hb_000120_060 Hb_000120_060 Hb_003693_070 Hb_003693_070 Hb_000120_060--Hb_003693_070 Hb_000270_490 Hb_000270_490 Hb_000120_060--Hb_000270_490 Hb_010142_030 Hb_010142_030 Hb_000120_060--Hb_010142_030 Hb_000808_280 Hb_000808_280 Hb_000120_060--Hb_000808_280 Hb_001492_020 Hb_001492_020 Hb_000120_060--Hb_001492_020 Hb_002783_240 Hb_002783_240 Hb_000120_060--Hb_002783_240 Hb_003693_070--Hb_010142_030 Hb_003693_070--Hb_000808_280 Hb_004046_050 Hb_004046_050 Hb_003693_070--Hb_004046_050 Hb_000205_300 Hb_000205_300 Hb_003693_070--Hb_000205_300 Hb_000019_030 Hb_000019_030 Hb_003693_070--Hb_000019_030 Hb_003376_330 Hb_003376_330 Hb_000270_490--Hb_003376_330 Hb_073973_100 Hb_073973_100 Hb_000270_490--Hb_073973_100 Hb_000270_490--Hb_003693_070 Hb_026198_070 Hb_026198_070 Hb_000270_490--Hb_026198_070 Hb_004127_030 Hb_004127_030 Hb_000270_490--Hb_004127_030 Hb_000023_280 Hb_000023_280 Hb_010142_030--Hb_000023_280 Hb_000116_410 Hb_000116_410 Hb_010142_030--Hb_000116_410 Hb_003940_040 Hb_003940_040 Hb_010142_030--Hb_003940_040 Hb_001635_090 Hb_001635_090 Hb_010142_030--Hb_001635_090 Hb_000630_050 Hb_000630_050 Hb_000808_280--Hb_000630_050 Hb_000085_160 Hb_000085_160 Hb_000808_280--Hb_000085_160 Hb_000083_250 Hb_000083_250 Hb_000808_280--Hb_000083_250 Hb_000120_670 Hb_000120_670 Hb_000808_280--Hb_000120_670 Hb_002235_170 Hb_002235_170 Hb_001492_020--Hb_002235_170 Hb_002213_070 Hb_002213_070 Hb_001492_020--Hb_002213_070 Hb_000640_120 Hb_000640_120 Hb_001492_020--Hb_000640_120 Hb_007336_010 Hb_007336_010 Hb_001492_020--Hb_007336_010 Hb_001314_010 Hb_001314_010 Hb_001492_020--Hb_001314_010 Hb_007059_010 Hb_007059_010 Hb_002783_240--Hb_007059_010 Hb_103012_010 Hb_103012_010 Hb_002783_240--Hb_103012_010 Hb_005211_100 Hb_005211_100 Hb_002783_240--Hb_005211_100 Hb_040262_010 Hb_040262_010 Hb_002783_240--Hb_040262_010 Hb_001946_010 Hb_001946_010 Hb_002783_240--Hb_001946_010 Hb_000345_240 Hb_000345_240 Hb_002783_240--Hb_000345_240
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
258.993 169.888 154.857 348.266 301.999 309.353
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
319.467 194.539 273.821 326.981 134.757

CAGE analysis