Hb_000345_240

Information

Type -
Description -
Location Contig345: 228340-232995
Sequence    

Annotation

kegg
ID rcu:RCOM_1432330
description cyclin h, putative
nr
ID XP_012089040.1
description PREDICTED: cyclin-H1-1 [Jatropha curcas]
swissprot
ID Q8W5S1
description Cyclin-H1-1 OS=Arabidopsis thaliana GN=CYCH1-1 PE=1 SV=1
trembl
ID B9RF84
description Cyclin h, putative OS=Ricinus communis GN=RCOM_1432330 PE=3 SV=1
Gene Ontology
ID GO:0070985
description cyclin-h1-1 isoform x2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_36002: 228499-232865
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000345_240 0.0 - - PREDICTED: cyclin-H1-1 [Jatropha curcas]
2 Hb_000260_330 0.0598364484 - - PREDICTED: uncharacterized protein LOC103438625 [Malus domestica]
3 Hb_000120_670 0.0602220988 - - PREDICTED: SRSF protein kinase 2-like [Jatropha curcas]
4 Hb_003964_070 0.0606862139 - - hypothetical protein JCGZ_15695 [Jatropha curcas]
5 Hb_003750_050 0.0701142635 - - PREDICTED: THO complex subunit 4D isoform X1 [Jatropha curcas]
6 Hb_000617_180 0.072672935 - - hypothetical protein B456_013G125900 [Gossypium raimondii]
7 Hb_004414_060 0.0731456086 - - hypothetical protein JCGZ_17225 [Jatropha curcas]
8 Hb_002811_180 0.0733048816 - - conserved hypothetical protein [Ricinus communis]
9 Hb_004410_030 0.07382864 - - PREDICTED: protein ACCUMULATION AND REPLICATION OF CHLOROPLASTS 6, chloroplastic isoform X1 [Jatropha curcas]
10 Hb_002783_240 0.074804867 - - PREDICTED: putative ER lumen protein-retaining receptor C28H8.4 [Jatropha curcas]
11 Hb_007317_110 0.0783538273 - - PREDICTED: uncharacterized RNA-binding protein C660.15-like [Jatropha curcas]
12 Hb_000923_010 0.0785176611 - - PREDICTED: C2 and GRAM domain-containing protein At1g03370 isoform X1 [Jatropha curcas]
13 Hb_001635_090 0.0796155306 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 7 isoform X1 [Populus euphratica]
14 Hb_000466_140 0.0800646522 - - hypothetical protein JCGZ_02122 [Jatropha curcas]
15 Hb_003525_010 0.0812582958 transcription factor TF Family: C2C2-GATA PREDICTED: GATA transcription factor 24-like isoform X1 [Populus euphratica]
16 Hb_000225_040 0.0814197573 - - PREDICTED: translation factor GUF1 homolog, mitochondrial [Nelumbo nucifera]
17 Hb_003464_080 0.0820760001 - - PREDICTED: pyruvate kinase, cytosolic isozyme-like [Jatropha curcas]
18 Hb_000011_200 0.0832040742 - - PREDICTED: 26S protease regulatory subunit 7 isoform X1 [Jatropha curcas]
19 Hb_000156_010 0.0832380278 - - phospho-n-acetylmuramoyl-pentapeptide-transferase, putative [Ricinus communis]
20 Hb_000613_050 0.0832552302 - - PREDICTED: uncharacterized protein LOC105641544 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_000345_240 Hb_000345_240 Hb_000260_330 Hb_000260_330 Hb_000345_240--Hb_000260_330 Hb_000120_670 Hb_000120_670 Hb_000345_240--Hb_000120_670 Hb_003964_070 Hb_003964_070 Hb_000345_240--Hb_003964_070 Hb_003750_050 Hb_003750_050 Hb_000345_240--Hb_003750_050 Hb_000617_180 Hb_000617_180 Hb_000345_240--Hb_000617_180 Hb_004414_060 Hb_004414_060 Hb_000345_240--Hb_004414_060 Hb_000025_180 Hb_000025_180 Hb_000260_330--Hb_000025_180 Hb_028512_020 Hb_028512_020 Hb_000260_330--Hb_028512_020 Hb_002811_180 Hb_002811_180 Hb_000260_330--Hb_002811_180 Hb_003683_020 Hb_003683_020 Hb_000260_330--Hb_003683_020 Hb_000923_010 Hb_000923_010 Hb_000260_330--Hb_000923_010 Hb_000120_670--Hb_003750_050 Hb_000580_180 Hb_000580_180 Hb_000120_670--Hb_000580_180 Hb_000120_670--Hb_003964_070 Hb_000019_030 Hb_000019_030 Hb_000120_670--Hb_000019_030 Hb_001279_150 Hb_001279_150 Hb_000120_670--Hb_001279_150 Hb_003665_060 Hb_003665_060 Hb_003964_070--Hb_003665_060 Hb_007317_110 Hb_007317_110 Hb_003964_070--Hb_007317_110 Hb_001357_350 Hb_001357_350 Hb_003964_070--Hb_001357_350 Hb_010381_090 Hb_010381_090 Hb_003964_070--Hb_010381_090 Hb_000156_010 Hb_000156_010 Hb_003750_050--Hb_000156_010 Hb_003750_050--Hb_001279_150 Hb_003750_050--Hb_002811_180 Hb_011037_030 Hb_011037_030 Hb_003750_050--Hb_011037_030 Hb_054865_150 Hb_054865_150 Hb_003750_050--Hb_054865_150 Hb_000462_060 Hb_000462_060 Hb_000617_180--Hb_000462_060 Hb_000347_070 Hb_000347_070 Hb_000617_180--Hb_000347_070 Hb_002375_010 Hb_002375_010 Hb_000617_180--Hb_002375_010 Hb_004619_030 Hb_004619_030 Hb_000617_180--Hb_004619_030 Hb_168978_030 Hb_168978_030 Hb_000617_180--Hb_168978_030 Hb_000008_290 Hb_000008_290 Hb_000617_180--Hb_000008_290 Hb_001632_040 Hb_001632_040 Hb_004414_060--Hb_001632_040 Hb_002835_040 Hb_002835_040 Hb_004414_060--Hb_002835_040 Hb_004414_060--Hb_003964_070 Hb_003163_020 Hb_003163_020 Hb_004414_060--Hb_003163_020 Hb_001493_030 Hb_001493_030 Hb_004414_060--Hb_001493_030 Hb_004414_060--Hb_007317_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.13819 4.21966 4.74138 6.85637 8.58358 8.43014
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.96604 7.20092 5.66126 8.50225 4.54347

CAGE analysis