Hb_000025_180

Information

Type -
Description -
Location Contig25: 150280-155719
Sequence    

Annotation

kegg
ID cit:102610441
description eukaryotic translation initiation factor 2 subunit beta-like
nr
ID KDO77370.1
description hypothetical protein CISIN_1g024241mg [Citrus sinensis]
swissprot
ID P55871
description Eukaryotic translation initiation factor 2 subunit beta OS=Malus domestica PE=2 SV=2
trembl
ID A0A067GPW2
description Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g024241mg PE=4 SV=1
Gene Ontology
ID GO:0003743
description eukaryotic translation initiation factor 2 subunit beta-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_26060: 150150-156032 , PASA_asmbl_26061: 152517-152739
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000025_180 0.0 - - hypothetical protein CISIN_1g024241mg [Citrus sinensis]
2 Hb_000260_330 0.0524108109 - - PREDICTED: uncharacterized protein LOC103438625 [Malus domestica]
3 Hb_172632_120 0.0630217998 - - conserved hypothetical protein [Ricinus communis]
4 Hb_003750_050 0.0671506622 - - PREDICTED: THO complex subunit 4D isoform X1 [Jatropha curcas]
5 Hb_013738_020 0.0683488665 - - PREDICTED: E3 ubiquitin-protein ligase RING1 [Jatropha curcas]
6 Hb_000603_150 0.0686991327 - - PREDICTED: guanine nucleotide-binding protein alpha-1 subunit [Jatropha curcas]
7 Hb_002811_180 0.0689483716 - - conserved hypothetical protein [Ricinus communis]
8 Hb_000923_010 0.0721512289 - - PREDICTED: C2 and GRAM domain-containing protein At1g03370 isoform X1 [Jatropha curcas]
9 Hb_000120_670 0.0754523998 - - PREDICTED: SRSF protein kinase 2-like [Jatropha curcas]
10 Hb_003994_230 0.0755012421 - - 7-dehydrocholesterol reductase, putative [Ricinus communis]
11 Hb_000948_230 0.0770981166 - - WD-repeat protein, putative [Ricinus communis]
12 Hb_004990_010 0.0779806218 - - PREDICTED: BTB/POZ and MATH domain-containing protein 4 [Jatropha curcas]
13 Hb_001408_040 0.0783294057 - - PREDICTED: MACPF domain-containing protein At4g24290 isoform X2 [Jatropha curcas]
14 Hb_001584_120 0.0801436333 - - PREDICTED: probable Xaa-Pro aminopeptidase 3 [Jatropha curcas]
15 Hb_028512_020 0.0813746789 - - PREDICTED: protein S-acyltransferase 11 isoform X2 [Jatropha curcas]
16 Hb_001635_090 0.0826991838 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 7 isoform X1 [Populus euphratica]
17 Hb_000580_180 0.0827970725 - - conserved hypothetical protein [Ricinus communis]
18 Hb_003683_020 0.0835356918 - - serine/threonine protein kinase, putative [Ricinus communis]
19 Hb_003528_030 0.0856741128 - - PREDICTED: eukaryotic translation initiation factor 3 subunit L-like [Jatropha curcas]
20 Hb_006588_200 0.0862835831 - - 3-beta-hydroxy-delta5-steroid dehydrogenase, putative [Ricinus communis]

Gene co-expression network

sample Hb_000025_180 Hb_000025_180 Hb_000260_330 Hb_000260_330 Hb_000025_180--Hb_000260_330 Hb_172632_120 Hb_172632_120 Hb_000025_180--Hb_172632_120 Hb_003750_050 Hb_003750_050 Hb_000025_180--Hb_003750_050 Hb_013738_020 Hb_013738_020 Hb_000025_180--Hb_013738_020 Hb_000603_150 Hb_000603_150 Hb_000025_180--Hb_000603_150 Hb_002811_180 Hb_002811_180 Hb_000025_180--Hb_002811_180 Hb_028512_020 Hb_028512_020 Hb_000260_330--Hb_028512_020 Hb_000345_240 Hb_000345_240 Hb_000260_330--Hb_000345_240 Hb_000260_330--Hb_002811_180 Hb_003683_020 Hb_003683_020 Hb_000260_330--Hb_003683_020 Hb_000923_010 Hb_000923_010 Hb_000260_330--Hb_000923_010 Hb_000025_630 Hb_000025_630 Hb_172632_120--Hb_000025_630 Hb_001408_040 Hb_001408_040 Hb_172632_120--Hb_001408_040 Hb_172632_120--Hb_000603_150 Hb_001959_110 Hb_001959_110 Hb_172632_120--Hb_001959_110 Hb_001142_030 Hb_001142_030 Hb_172632_120--Hb_001142_030 Hb_000156_010 Hb_000156_010 Hb_003750_050--Hb_000156_010 Hb_000120_670 Hb_000120_670 Hb_003750_050--Hb_000120_670 Hb_001279_150 Hb_001279_150 Hb_003750_050--Hb_001279_150 Hb_003750_050--Hb_002811_180 Hb_011037_030 Hb_011037_030 Hb_003750_050--Hb_011037_030 Hb_054865_150 Hb_054865_150 Hb_003750_050--Hb_054865_150 Hb_000116_450 Hb_000116_450 Hb_013738_020--Hb_000116_450 Hb_000220_010 Hb_000220_010 Hb_013738_020--Hb_000220_010 Hb_000705_170 Hb_000705_170 Hb_013738_020--Hb_000705_170 Hb_002936_010 Hb_002936_010 Hb_013738_020--Hb_002936_010 Hb_004990_010 Hb_004990_010 Hb_013738_020--Hb_004990_010 Hb_002110_080 Hb_002110_080 Hb_013738_020--Hb_002110_080 Hb_006455_120 Hb_006455_120 Hb_000603_150--Hb_006455_120 Hb_001159_130 Hb_001159_130 Hb_000603_150--Hb_001159_130 Hb_000205_300 Hb_000205_300 Hb_000603_150--Hb_000205_300 Hb_000603_150--Hb_000120_670 Hb_000580_180 Hb_000580_180 Hb_000603_150--Hb_000580_180 Hb_003549_150 Hb_003549_150 Hb_000603_150--Hb_003549_150 Hb_000621_010 Hb_000621_010 Hb_002811_180--Hb_000621_010 Hb_008847_030 Hb_008847_030 Hb_002811_180--Hb_008847_030 Hb_000392_430 Hb_000392_430 Hb_002811_180--Hb_000392_430 Hb_000111_320 Hb_000111_320 Hb_002811_180--Hb_000111_320
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
36.6326 37.2357 32.978 70.1205 46.2984 50.1473
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
36.5749 55.6233 38.5713 50.1201 24.4846

CAGE analysis