Hb_000705_170

Information

Type -
Description -
Location Contig705: 114197-116186
Sequence    

Annotation

kegg
ID rcu:RCOM_1461430
description hypothetical protein
nr
ID XP_012066943.1
description PREDICTED: pentatricopeptide repeat-containing protein At3g46870 [Jatropha curcas]
swissprot
ID Q9STF9
description Pentatricopeptide repeat-containing protein At3g46870 OS=Arabidopsis thaliana GN=At3g46870 PE=1 SV=1
trembl
ID A0A067L186
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02917 PE=4 SV=1
Gene Ontology
ID GO:0009507
description pentatricopeptide repeat-containing protein at3g46870

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_55072: 114182-116214 , PASA_asmbl_55073: 114245-115972
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000705_170 0.0 - - PREDICTED: pentatricopeptide repeat-containing protein At3g46870 [Jatropha curcas]
2 Hb_013738_020 0.0667102498 - - PREDICTED: E3 ubiquitin-protein ligase RING1 [Jatropha curcas]
3 Hb_000116_450 0.0677999323 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 1 [Jatropha curcas]
4 Hb_000087_060 0.0692649448 - - protein transporter, putative [Ricinus communis]
5 Hb_005288_170 0.0726735652 - - PREDICTED: pentatricopeptide repeat-containing protein At1g08610 [Populus euphratica]
6 Hb_000402_080 0.0768813089 - - PREDICTED: pentatricopeptide repeat-containing protein At1g60770 [Jatropha curcas]
7 Hb_002110_080 0.0785632747 - - FH interacting protein 1 [Theobroma cacao]
8 Hb_007035_050 0.0793432249 - - PREDICTED: cleavage stimulating factor 64 [Jatropha curcas]
9 Hb_000220_010 0.0795626443 - - PREDICTED: uncharacterized protein LOC105630083 [Jatropha curcas]
10 Hb_095296_010 0.0802589037 - - PREDICTED: syntaxin-32 [Jatropha curcas]
11 Hb_000454_130 0.0809019762 transcription factor TF Family: BBR-BPC conserved hypothetical protein [Ricinus communis]
12 Hb_000868_110 0.0814610503 - - PREDICTED: uncharacterized protein LOC105638026 [Jatropha curcas]
13 Hb_000340_400 0.0824310074 - - Histidine-containing phosphotransfer protein, putative [Ricinus communis]
14 Hb_021419_030 0.0858934873 - - hypothetical protein glysoja_023295 [Glycine soja]
15 Hb_000076_160 0.0865942215 - - PREDICTED: AP-5 complex subunit zeta-1 [Jatropha curcas]
16 Hb_000120_170 0.0866091565 - - selenoprotein [Populus trichocarpa]
17 Hb_001205_200 0.086737147 - - conserved hypothetical protein [Ricinus communis]
18 Hb_002073_200 0.0874217799 - - Phosphatase 2A-2 [Theobroma cacao]
19 Hb_000358_230 0.0878931441 - - protein phosphatases pp1 regulatory subunit, putative [Ricinus communis]
20 Hb_005116_060 0.0883382761 - - PREDICTED: mitochondrial Rho GTPase 2 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000705_170 Hb_000705_170 Hb_013738_020 Hb_013738_020 Hb_000705_170--Hb_013738_020 Hb_000116_450 Hb_000116_450 Hb_000705_170--Hb_000116_450 Hb_000087_060 Hb_000087_060 Hb_000705_170--Hb_000087_060 Hb_005288_170 Hb_005288_170 Hb_000705_170--Hb_005288_170 Hb_000402_080 Hb_000402_080 Hb_000705_170--Hb_000402_080 Hb_002110_080 Hb_002110_080 Hb_000705_170--Hb_002110_080 Hb_013738_020--Hb_000116_450 Hb_000220_010 Hb_000220_010 Hb_013738_020--Hb_000220_010 Hb_002936_010 Hb_002936_010 Hb_013738_020--Hb_002936_010 Hb_004990_010 Hb_004990_010 Hb_013738_020--Hb_004990_010 Hb_013738_020--Hb_002110_080 Hb_000340_530 Hb_000340_530 Hb_000116_450--Hb_000340_530 Hb_002374_370 Hb_002374_370 Hb_000116_450--Hb_002374_370 Hb_003938_090 Hb_003938_090 Hb_000116_450--Hb_003938_090 Hb_093458_040 Hb_093458_040 Hb_000116_450--Hb_093458_040 Hb_000258_070 Hb_000258_070 Hb_000116_450--Hb_000258_070 Hb_001205_200 Hb_001205_200 Hb_000087_060--Hb_001205_200 Hb_002492_010 Hb_002492_010 Hb_000087_060--Hb_002492_010 Hb_001089_050 Hb_001089_050 Hb_000087_060--Hb_001089_050 Hb_000358_230 Hb_000358_230 Hb_000087_060--Hb_000358_230 Hb_000076_160 Hb_000076_160 Hb_000087_060--Hb_000076_160 Hb_000454_130 Hb_000454_130 Hb_000087_060--Hb_000454_130 Hb_000049_260 Hb_000049_260 Hb_005288_170--Hb_000049_260 Hb_004236_050 Hb_004236_050 Hb_005288_170--Hb_004236_050 Hb_000861_080 Hb_000861_080 Hb_005288_170--Hb_000861_080 Hb_003929_280 Hb_003929_280 Hb_005288_170--Hb_003929_280 Hb_005288_170--Hb_000454_130 Hb_000928_220 Hb_000928_220 Hb_000402_080--Hb_000928_220 Hb_000402_080--Hb_000076_160 Hb_001104_160 Hb_001104_160 Hb_000402_080--Hb_001104_160 Hb_008453_140 Hb_008453_140 Hb_000402_080--Hb_008453_140 Hb_002876_130 Hb_002876_130 Hb_000402_080--Hb_002876_130 Hb_000696_230 Hb_000696_230 Hb_000402_080--Hb_000696_230 Hb_000029_060 Hb_000029_060 Hb_002110_080--Hb_000029_060 Hb_001481_060 Hb_001481_060 Hb_002110_080--Hb_001481_060 Hb_002110_080--Hb_002492_010 Hb_001716_020 Hb_001716_020 Hb_002110_080--Hb_001716_020 Hb_002110_080--Hb_000087_060 Hb_000962_030 Hb_000962_030 Hb_002110_080--Hb_000962_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.0284 17.1177 11.5385 14.5548 13.5573 9.75188
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
10.0425 16.4312 8.0565 8.77065 8.89779

CAGE analysis