Hb_002374_370

Information

Type -
Description -
Location Contig2374: 355616-360636
Sequence    

Annotation

kegg
ID rcu:RCOM_1030590
description protein with unknown function
nr
ID XP_002513749.1
description protein with unknown function [Ricinus communis]
swissprot
ID Q9XI00
description F-box protein 7 OS=Arabidopsis thaliana GN=SKIP32 PE=1 SV=1
trembl
ID B9RJ30
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1030590 PE=4 SV=1
Gene Ontology
ID GO:0006950
description f-box protein 7

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_24903: 355727-360643
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002374_370 0.0 - - protein with unknown function [Ricinus communis]
2 Hb_000116_450 0.0632202468 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 1 [Jatropha curcas]
3 Hb_000258_070 0.0683039007 - - PREDICTED: uncharacterized protein LOC105649104 [Jatropha curcas]
4 Hb_000347_430 0.0733885368 - - PREDICTED: mitochondrial ubiquitin ligase activator of nfkb 1-A [Jatropha curcas]
5 Hb_028512_020 0.0745118626 - - PREDICTED: protein S-acyltransferase 11 isoform X2 [Jatropha curcas]
6 Hb_000340_530 0.076498178 - - hypothetical protein VITISV_016664 [Vitis vinifera]
7 Hb_002217_250 0.0766359569 - - conserved hypothetical protein [Ricinus communis]
8 Hb_007416_340 0.076906202 - - PREDICTED: uncharacterized aarF domain-containing protein kinase At4g31390, chloroplastic isoform X1 [Jatropha curcas]
9 Hb_001021_150 0.0781964759 - - PREDICTED: metal tolerance protein C1 [Jatropha curcas]
10 Hb_000976_140 0.0789487481 - - PREDICTED: uncharacterized protein LOC105646208 isoform X1 [Jatropha curcas]
11 Hb_000035_470 0.0806204953 - - PREDICTED: uncharacterized aarF domain-containing protein kinase At1g79600, chloroplastic [Jatropha curcas]
12 Hb_021419_030 0.0807197888 - - hypothetical protein glysoja_023295 [Glycine soja]
13 Hb_023313_030 0.0808721503 - - conserved hypothetical protein [Ricinus communis]
14 Hb_000000_150 0.0815946608 - - PREDICTED: uncharacterized protein LOC105633730 [Jatropha curcas]
15 Hb_002073_190 0.0827131378 - - PREDICTED: uncharacterized protein LOC105649812 isoform X1 [Jatropha curcas]
16 Hb_008847_030 0.0828356602 - - PREDICTED: TLD domain-containing protein 1 [Jatropha curcas]
17 Hb_000029_300 0.0836395879 - - hypothetical protein JCGZ_10048 [Jatropha curcas]
18 Hb_000621_010 0.0842151428 - - PREDICTED: uncharacterized protein LOC103444129 [Malus domestica]
19 Hb_002947_030 0.0851422229 - - PREDICTED: uncharacterized protein LOC105633529 [Jatropha curcas]
20 Hb_001882_050 0.0855426599 - - hydroxysteroid dehydrogenase, putative [Ricinus communis]

Gene co-expression network

sample Hb_002374_370 Hb_002374_370 Hb_000116_450 Hb_000116_450 Hb_002374_370--Hb_000116_450 Hb_000258_070 Hb_000258_070 Hb_002374_370--Hb_000258_070 Hb_000347_430 Hb_000347_430 Hb_002374_370--Hb_000347_430 Hb_028512_020 Hb_028512_020 Hb_002374_370--Hb_028512_020 Hb_000340_530 Hb_000340_530 Hb_002374_370--Hb_000340_530 Hb_002217_250 Hb_002217_250 Hb_002374_370--Hb_002217_250 Hb_000116_450--Hb_000340_530 Hb_013738_020 Hb_013738_020 Hb_000116_450--Hb_013738_020 Hb_003938_090 Hb_003938_090 Hb_000116_450--Hb_003938_090 Hb_093458_040 Hb_093458_040 Hb_000116_450--Hb_093458_040 Hb_000116_450--Hb_000258_070 Hb_000441_090 Hb_000441_090 Hb_000258_070--Hb_000441_090 Hb_015807_050 Hb_015807_050 Hb_000258_070--Hb_015807_050 Hb_002849_130 Hb_002849_130 Hb_000258_070--Hb_002849_130 Hb_000258_070--Hb_000340_530 Hb_000313_220 Hb_000313_220 Hb_000258_070--Hb_000313_220 Hb_000258_070--Hb_000347_430 Hb_000406_200 Hb_000406_200 Hb_000347_430--Hb_000406_200 Hb_000363_310 Hb_000363_310 Hb_000347_430--Hb_000363_310 Hb_000138_100 Hb_000138_100 Hb_000347_430--Hb_000138_100 Hb_003517_040 Hb_003517_040 Hb_000347_430--Hb_003517_040 Hb_001021_150 Hb_001021_150 Hb_000347_430--Hb_001021_150 Hb_002026_210 Hb_002026_210 Hb_028512_020--Hb_002026_210 Hb_000260_330 Hb_000260_330 Hb_028512_020--Hb_000260_330 Hb_004109_230 Hb_004109_230 Hb_028512_020--Hb_004109_230 Hb_001860_030 Hb_001860_030 Hb_028512_020--Hb_001860_030 Hb_000923_010 Hb_000923_010 Hb_028512_020--Hb_000923_010 Hb_014361_070 Hb_014361_070 Hb_028512_020--Hb_014361_070 Hb_002989_020 Hb_002989_020 Hb_000340_530--Hb_002989_020 Hb_011063_050 Hb_011063_050 Hb_000340_530--Hb_011063_050 Hb_000340_530--Hb_093458_040 Hb_001679_050 Hb_001679_050 Hb_000340_530--Hb_001679_050 Hb_004109_080 Hb_004109_080 Hb_000340_530--Hb_004109_080 Hb_007645_100 Hb_007645_100 Hb_002217_250--Hb_007645_100 Hb_002263_020 Hb_002263_020 Hb_002217_250--Hb_002263_020 Hb_002217_250--Hb_000347_430 Hb_002217_250--Hb_003517_040 Hb_002732_040 Hb_002732_040 Hb_002217_250--Hb_002732_040 Hb_002217_250--Hb_000340_530
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.44115 7.96078 7.11969 10.2908 11.6938 8.71948
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.94684 9.41076 5.18109 7.75778 9.52281

CAGE analysis