Hb_000363_310

Information

Type -
Description -
Location Contig363: 274157-280472
Sequence    

Annotation

kegg
ID rcu:RCOM_0045870
description DNA topoisomerase type I, putative (EC:1.3.1.74)
nr
ID XP_002529020.1
description DNA topoisomerase type I, putative [Ricinus communis]
swissprot
ID P30181
description DNA topoisomerase 1 OS=Arabidopsis thaliana GN=TOP1 PE=1 SV=1
trembl
ID B9SSQ1
description DNA topoisomerase type I, putative OS=Ricinus communis GN=RCOM_0045870 PE=4 SV=1
Gene Ontology
ID GO:0005694
description dna topoisomerase 1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_37317: 273449-280714
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000363_310 0.0 - - DNA topoisomerase type I, putative [Ricinus communis]
2 Hb_000347_430 0.0556367306 - - PREDICTED: mitochondrial ubiquitin ligase activator of nfkb 1-A [Jatropha curcas]
3 Hb_001377_190 0.0600939189 transcription factor TF Family: PHD PREDICTED: histone-lysine N-methyltransferase ATX3 isoform X2 [Jatropha curcas]
4 Hb_000773_040 0.0608114348 - - PREDICTED: uncharacterized protein LOC105641863 isoform X2 [Jatropha curcas]
5 Hb_000111_170 0.0627577296 - - PREDICTED: uncharacterized protein LOC105631234 isoform X1 [Jatropha curcas]
6 Hb_007765_100 0.0651042484 - - PREDICTED: helicase SKI2W [Jatropha curcas]
7 Hb_000749_010 0.0653339939 - - PREDICTED: non-canonical poly(A) RNA polymerase PAPD5 isoform X1 [Jatropha curcas]
8 Hb_007894_150 0.0663675906 - - hypothetical protein EUGRSUZ_F03462 [Eucalyptus grandis]
9 Hb_188281_040 0.0666905009 - - PREDICTED: transcription initiation factor TFIID subunit 12 [Jatropha curcas]
10 Hb_003428_010 0.0683650807 - - PREDICTED: probable NAD(P)H dehydrogenase (quinone) FQR1-like 1 [Jatropha curcas]
11 Hb_001226_150 0.0686859394 - - PREDICTED: serine/threonine-protein kinase 38-like isoform X3 [Jatropha curcas]
12 Hb_005867_070 0.0700205009 - - DNA binding protein, putative [Ricinus communis]
13 Hb_183510_020 0.0700417141 - - coated vesicle membrane protein, putative [Ricinus communis]
14 Hb_000406_200 0.0703262501 - - PREDICTED: translation initiation factor eIF-2B subunit epsilon-like isoform X4 [Jatropha curcas]
15 Hb_002849_130 0.0707525346 - - PREDICTED: RAB6A-GEF complex partner protein 1-like [Jatropha curcas]
16 Hb_001720_040 0.0709956688 - - conserved hypothetical protein [Ricinus communis]
17 Hb_000441_090 0.0714122254 - - PREDICTED: serine/threonine-protein phosphatase 6 regulatory subunit 2 [Jatropha curcas]
18 Hb_000375_390 0.0721491681 - - poly-A binding protein, putative [Ricinus communis]
19 Hb_006483_110 0.0722419557 - - PREDICTED: RNA-binding protein Musashi homolog 1 [Jatropha curcas]
20 Hb_002071_070 0.0727858187 transcription factor TF Family: RB conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_000363_310 Hb_000363_310 Hb_000347_430 Hb_000347_430 Hb_000363_310--Hb_000347_430 Hb_001377_190 Hb_001377_190 Hb_000363_310--Hb_001377_190 Hb_000773_040 Hb_000773_040 Hb_000363_310--Hb_000773_040 Hb_000111_170 Hb_000111_170 Hb_000363_310--Hb_000111_170 Hb_007765_100 Hb_007765_100 Hb_000363_310--Hb_007765_100 Hb_000749_010 Hb_000749_010 Hb_000363_310--Hb_000749_010 Hb_000406_200 Hb_000406_200 Hb_000347_430--Hb_000406_200 Hb_000138_100 Hb_000138_100 Hb_000347_430--Hb_000138_100 Hb_000258_070 Hb_000258_070 Hb_000347_430--Hb_000258_070 Hb_003517_040 Hb_003517_040 Hb_000347_430--Hb_003517_040 Hb_001021_150 Hb_001021_150 Hb_000347_430--Hb_001021_150 Hb_007413_010 Hb_007413_010 Hb_001377_190--Hb_007413_010 Hb_000189_600 Hb_000189_600 Hb_001377_190--Hb_000189_600 Hb_006913_020 Hb_006913_020 Hb_001377_190--Hb_006913_020 Hb_001377_190--Hb_000749_010 Hb_001925_060 Hb_001925_060 Hb_001377_190--Hb_001925_060 Hb_073171_070 Hb_073171_070 Hb_000773_040--Hb_073171_070 Hb_000270_190 Hb_000270_190 Hb_000773_040--Hb_000270_190 Hb_000317_100 Hb_000317_100 Hb_000773_040--Hb_000317_100 Hb_000409_050 Hb_000409_050 Hb_000773_040--Hb_000409_050 Hb_002890_130 Hb_002890_130 Hb_000773_040--Hb_002890_130 Hb_003040_050 Hb_003040_050 Hb_000773_040--Hb_003040_050 Hb_000085_210 Hb_000085_210 Hb_000111_170--Hb_000085_210 Hb_001221_440 Hb_001221_440 Hb_000111_170--Hb_001221_440 Hb_030414_040 Hb_030414_040 Hb_000111_170--Hb_030414_040 Hb_005288_070 Hb_005288_070 Hb_000111_170--Hb_005288_070 Hb_183433_010 Hb_183433_010 Hb_000111_170--Hb_183433_010 Hb_000665_120 Hb_000665_120 Hb_007765_100--Hb_000665_120 Hb_008059_010 Hb_008059_010 Hb_007765_100--Hb_008059_010 Hb_170416_010 Hb_170416_010 Hb_007765_100--Hb_170416_010 Hb_002218_090 Hb_002218_090 Hb_007765_100--Hb_002218_090 Hb_001226_150 Hb_001226_150 Hb_007765_100--Hb_001226_150 Hb_002205_230 Hb_002205_230 Hb_000749_010--Hb_002205_230 Hb_021374_030 Hb_021374_030 Hb_000749_010--Hb_021374_030 Hb_000599_270 Hb_000599_270 Hb_000749_010--Hb_000599_270 Hb_000749_010--Hb_000111_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
12.0741 20.7854 24.3513 18.9947 18.7989 16.2349
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
13.5529 18.4776 16.0381 19.6296 27.4235

CAGE analysis