Hb_000599_270

Information

Type -
Description -
Location Contig599: 275957-286167
Sequence    

Annotation

kegg
ID rcu:RCOM_0259220
description calcium ion binding protein, putative
nr
ID XP_012085282.1
description PREDICTED: serine/threonine protein phosphatase 2A regulatory subunit B''beta isoform X3 [Jatropha curcas]
swissprot
ID Q5QIT3
description Serine/threonine protein phosphatase 2A regulatory subunit B''beta OS=Arabidopsis thaliana GN=B''BETA PE=1 SV=1
trembl
ID A0A067JUK8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17666 PE=4 SV=1
Gene Ontology
ID GO:0005509
description serine threonine protein phosphatase 2a regulatory subunit b beta-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_50487: 276017-276231 , PASA_asmbl_50488: 276471-286128 , PASA_asmbl_50489: 284021-284401 , PASA_asmbl_50490: 285577-285757
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000599_270 0.0 - - PREDICTED: serine/threonine protein phosphatase 2A regulatory subunit B''beta isoform X3 [Jatropha curcas]
2 Hb_021374_030 0.0640696186 - - hypothetical protein RCOM_0351490 [Ricinus communis]
3 Hb_002581_010 0.0653828074 - - PREDICTED: uncharacterized protein LOC105641469 isoform X2 [Jatropha curcas]
4 Hb_006913_020 0.0660200102 - - PREDICTED: uncharacterized protein LOC105649145 isoform X1 [Jatropha curcas]
5 Hb_007413_010 0.0682686686 - - PREDICTED: SUMO-activating enzyme subunit 2 [Jatropha curcas]
6 Hb_017469_110 0.0683763698 - - PREDICTED: uncharacterized protein LOC105641795 [Jatropha curcas]
7 Hb_002205_230 0.0688196503 - - glycerol-3-phosphate dehydrogenase, putative [Ricinus communis]
8 Hb_000749_010 0.0689493441 - - PREDICTED: non-canonical poly(A) RNA polymerase PAPD5 isoform X1 [Jatropha curcas]
9 Hb_001163_060 0.0756997656 - - neutral/alkaline invertase [Manihot esculenta]
10 Hb_003117_030 0.0796389027 - - PREDICTED: protein RCC2 homolog [Jatropha curcas]
11 Hb_001377_190 0.081063753 transcription factor TF Family: PHD PREDICTED: histone-lysine N-methyltransferase ATX3 isoform X2 [Jatropha curcas]
12 Hb_000237_200 0.0833972388 - - PREDICTED: SUMO-activating enzyme subunit 2 [Jatropha curcas]
13 Hb_005288_070 0.0842516405 transcription factor TF Family: G2-like DNA binding protein, putative [Ricinus communis]
14 Hb_001008_070 0.0847023532 - - PREDICTED: periodic tryptophan protein 2 homolog [Jatropha curcas]
15 Hb_000797_040 0.087038595 - - PREDICTED: uncharacterized protein LOC105645914 [Jatropha curcas]
16 Hb_005260_030 0.0874392624 - - PREDICTED: uncharacterized protein LOC105633782 [Jatropha curcas]
17 Hb_000795_040 0.0891203494 - - PREDICTED: sister chromatid cohesion protein PDS5 homolog A isoform X1 [Jatropha curcas]
18 Hb_004003_040 0.090349529 - - dead box ATP-dependent RNA helicase, putative [Ricinus communis]
19 Hb_000169_020 0.0904241962 transcription factor TF Family: C2C2-CO-like hypothetical protein RCOM_0555710 [Ricinus communis]
20 Hb_001005_130 0.0905131732 - - PREDICTED: uncharacterized protein LOC105630220 isoform X4 [Jatropha curcas]

Gene co-expression network

sample Hb_000599_270 Hb_000599_270 Hb_021374_030 Hb_021374_030 Hb_000599_270--Hb_021374_030 Hb_002581_010 Hb_002581_010 Hb_000599_270--Hb_002581_010 Hb_006913_020 Hb_006913_020 Hb_000599_270--Hb_006913_020 Hb_007413_010 Hb_007413_010 Hb_000599_270--Hb_007413_010 Hb_017469_110 Hb_017469_110 Hb_000599_270--Hb_017469_110 Hb_002205_230 Hb_002205_230 Hb_000599_270--Hb_002205_230 Hb_021374_030--Hb_006913_020 Hb_021374_030--Hb_007413_010 Hb_000237_200 Hb_000237_200 Hb_021374_030--Hb_000237_200 Hb_000749_010 Hb_000749_010 Hb_021374_030--Hb_000749_010 Hb_183433_010 Hb_183433_010 Hb_021374_030--Hb_183433_010 Hb_001008_070 Hb_001008_070 Hb_002581_010--Hb_001008_070 Hb_000795_040 Hb_000795_040 Hb_002581_010--Hb_000795_040 Hb_003117_030 Hb_003117_030 Hb_002581_010--Hb_003117_030 Hb_002581_010--Hb_017469_110 Hb_002581_010--Hb_007413_010 Hb_006913_020--Hb_007413_010 Hb_008948_020 Hb_008948_020 Hb_006913_020--Hb_008948_020 Hb_001377_190 Hb_001377_190 Hb_006913_020--Hb_001377_190 Hb_001789_110 Hb_001789_110 Hb_006913_020--Hb_001789_110 Hb_003098_070 Hb_003098_070 Hb_006913_020--Hb_003098_070 Hb_007413_010--Hb_003117_030 Hb_007413_010--Hb_008948_020 Hb_007413_010--Hb_001377_190 Hb_001925_060 Hb_001925_060 Hb_007413_010--Hb_001925_060 Hb_007413_010--Hb_001789_110 Hb_013459_020 Hb_013459_020 Hb_017469_110--Hb_013459_020 Hb_011174_020 Hb_011174_020 Hb_017469_110--Hb_011174_020 Hb_017469_110--Hb_000795_040 Hb_005276_200 Hb_005276_200 Hb_017469_110--Hb_005276_200 Hb_017469_110--Hb_001008_070 Hb_002205_230--Hb_000749_010 Hb_000059_380 Hb_000059_380 Hb_002205_230--Hb_000059_380 Hb_001589_010 Hb_001589_010 Hb_002205_230--Hb_001589_010 Hb_002205_230--Hb_021374_030 Hb_000797_040 Hb_000797_040 Hb_002205_230--Hb_000797_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.69466 7.18978 8.57611 4.60815 3.53565 5.98008
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.60586 5.74867 4.58784 6.12795 12.0243

CAGE analysis