Hb_003098_070

Information

Type -
Description -
Location Contig3098: 84039-88034
Sequence    

Annotation

kegg
ID rcu:RCOM_0701710
description zinc finger protein, putative
nr
ID XP_012071430.1
description PREDICTED: uncharacterized protein LOC105633456 [Jatropha curcas]
swissprot
ID B4M9F7
description Zinc finger CCCH-type with G patch domain-containing protein OS=Drosophila virilis GN=GJ17921 PE=3 SV=1
trembl
ID A0A067KR52
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_03975 PE=4 SV=1
Gene Ontology
ID GO:0003676
description zinc finger isoform 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_32754: 84021-101096
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003098_070 0.0 - - PREDICTED: uncharacterized protein LOC105633456 [Jatropha curcas]
2 Hb_000139_080 0.0472905079 - - PREDICTED: vacuole membrane protein KMS1 isoform X2 [Jatropha curcas]
3 Hb_000365_230 0.0561294186 - - PREDICTED: uncharacterized protein LOC105649056 [Jatropha curcas]
4 Hb_006189_020 0.0571176989 - - PREDICTED: mitogen-activated protein kinase kinase kinase YODA [Jatropha curcas]
5 Hb_033312_040 0.0580042736 - - PREDICTED: gamma-tubulin complex component 5-like isoform X1 [Jatropha curcas]
6 Hb_000476_060 0.0590737322 - - Tetratricopeptide repeat (TPR)-like superfamily protein isoform 1 [Theobroma cacao]
7 Hb_000078_140 0.0603273167 - - PREDICTED: WD repeat-containing protein 11 [Jatropha curcas]
8 Hb_001635_110 0.0607594911 - - PREDICTED: NADP-specific glutamate dehydrogenase [Jatropha curcas]
9 Hb_008304_020 0.0639183231 - - PREDICTED: ATP-dependent RNA helicase DBP2-like [Jatropha curcas]
10 Hb_006913_020 0.0641636835 - - PREDICTED: uncharacterized protein LOC105649145 isoform X1 [Jatropha curcas]
11 Hb_003430_050 0.0648304075 - - PREDICTED: serine/arginine-rich splicing factor RSZ21A isoform X1 [Phoenix dactylifera]
12 Hb_007894_150 0.0651907757 - - hypothetical protein EUGRSUZ_F03462 [Eucalyptus grandis]
13 Hb_004324_360 0.0678166015 - - PREDICTED: uncharacterized protein LOC105650600 isoform X1 [Jatropha curcas]
14 Hb_000699_150 0.0692769859 - - PREDICTED: AT-hook motif nuclear-localized protein 14 [Jatropha curcas]
15 Hb_004333_040 0.0701744936 - - PREDICTED: uncharacterized protein LOC105629988 [Jatropha curcas]
16 Hb_004109_320 0.0708173677 - - PREDICTED: vacuolar protein sorting-associated protein 52 A [Jatropha curcas]
17 Hb_183433_010 0.0710268649 - - PREDICTED: FAD synthase isoform X3 [Jatropha curcas]
18 Hb_006824_010 0.0711940126 - - PREDICTED: origin of replication complex subunit 4 [Jatropha curcas]
19 Hb_021374_030 0.0713561379 - - hypothetical protein RCOM_0351490 [Ricinus communis]
20 Hb_000035_090 0.0714066474 - - PREDICTED: stromal cell-derived factor 2-like protein [Jatropha curcas]

Gene co-expression network

sample Hb_003098_070 Hb_003098_070 Hb_000139_080 Hb_000139_080 Hb_003098_070--Hb_000139_080 Hb_000365_230 Hb_000365_230 Hb_003098_070--Hb_000365_230 Hb_006189_020 Hb_006189_020 Hb_003098_070--Hb_006189_020 Hb_033312_040 Hb_033312_040 Hb_003098_070--Hb_033312_040 Hb_000476_060 Hb_000476_060 Hb_003098_070--Hb_000476_060 Hb_000078_140 Hb_000078_140 Hb_003098_070--Hb_000078_140 Hb_000139_080--Hb_033312_040 Hb_000139_080--Hb_000078_140 Hb_000139_080--Hb_006189_020 Hb_003626_070 Hb_003626_070 Hb_000139_080--Hb_003626_070 Hb_000169_020 Hb_000169_020 Hb_000139_080--Hb_000169_020 Hb_164390_010 Hb_164390_010 Hb_000365_230--Hb_164390_010 Hb_004109_320 Hb_004109_320 Hb_000365_230--Hb_004109_320 Hb_007894_150 Hb_007894_150 Hb_000365_230--Hb_007894_150 Hb_062226_130 Hb_062226_130 Hb_000365_230--Hb_062226_130 Hb_000778_010 Hb_000778_010 Hb_000365_230--Hb_000778_010 Hb_006189_020--Hb_033312_040 Hb_000409_050 Hb_000409_050 Hb_006189_020--Hb_000409_050 Hb_004333_040 Hb_004333_040 Hb_006189_020--Hb_004333_040 Hb_001817_170 Hb_001817_170 Hb_006189_020--Hb_001817_170 Hb_000510_360 Hb_000510_360 Hb_006189_020--Hb_000510_360 Hb_033312_040--Hb_000510_360 Hb_001481_060 Hb_001481_060 Hb_033312_040--Hb_001481_060 Hb_033312_040--Hb_004333_040 Hb_089839_010 Hb_089839_010 Hb_000476_060--Hb_089839_010 Hb_001635_110 Hb_001635_110 Hb_000476_060--Hb_001635_110 Hb_000788_030 Hb_000788_030 Hb_000476_060--Hb_000788_030 Hb_004324_360 Hb_004324_360 Hb_000476_060--Hb_004324_360 Hb_000120_890 Hb_000120_890 Hb_000476_060--Hb_000120_890 Hb_079526_040 Hb_079526_040 Hb_000078_140--Hb_079526_040 Hb_074197_040 Hb_074197_040 Hb_000078_140--Hb_074197_040 Hb_032202_220 Hb_032202_220 Hb_000078_140--Hb_032202_220 Hb_001195_400 Hb_001195_400 Hb_000078_140--Hb_001195_400
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.36412 11.0801 18.1452 14.5962 6.49887 8.26747
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.79338 10.0241 8.70176 12.0638 15.1468

CAGE analysis