Hb_006189_020

Information

Type -
Description -
Location Contig6189: 8885-14190
Sequence    

Annotation

kegg
ID pper:PRUPE_ppa002709mg
description hypothetical protein
nr
ID XP_012066579.1
description PREDICTED: mitogen-activated protein kinase kinase kinase YODA [Jatropha curcas]
swissprot
ID Q9CAD5
description Mitogen-activated protein kinase kinase kinase YODA OS=Arabidopsis thaliana GN=YDA PE=1 SV=1
trembl
ID A0A067L2C5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24361 PE=4 SV=1
Gene Ontology
ID GO:0004672
description mitogen-activated protein kinase kinase kinase yoda-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_51350: 8916-14109
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006189_020 0.0 - - PREDICTED: mitogen-activated protein kinase kinase kinase YODA [Jatropha curcas]
2 Hb_033312_040 0.0480705354 - - PREDICTED: gamma-tubulin complex component 5-like isoform X1 [Jatropha curcas]
3 Hb_000409_050 0.051728624 transcription factor TF Family: HMG PREDICTED: FACT complex subunit SSRP1 [Jatropha curcas]
4 Hb_004333_040 0.0525966209 - - PREDICTED: uncharacterized protein LOC105629988 [Jatropha curcas]
5 Hb_001817_170 0.0538738375 - - PREDICTED: AP-1 complex subunit gamma-2-like [Jatropha curcas]
6 Hb_000510_360 0.0542750605 transcription factor TF Family: GNAT PREDICTED: histone acetyltransferase GCN5 [Jatropha curcas]
7 Hb_000139_080 0.0556902888 - - PREDICTED: vacuole membrane protein KMS1 isoform X2 [Jatropha curcas]
8 Hb_008304_020 0.056093641 - - PREDICTED: ATP-dependent RNA helicase DBP2-like [Jatropha curcas]
9 Hb_003098_070 0.0571176989 - - PREDICTED: uncharacterized protein LOC105633456 [Jatropha curcas]
10 Hb_007894_150 0.0597383393 - - hypothetical protein EUGRSUZ_F03462 [Eucalyptus grandis]
11 Hb_001635_110 0.0603939197 - - PREDICTED: NADP-specific glutamate dehydrogenase [Jatropha curcas]
12 Hb_004109_320 0.0621086263 - - PREDICTED: vacuolar protein sorting-associated protein 52 A [Jatropha curcas]
13 Hb_003758_010 0.0631383703 transcription factor TF Family: VOZ PREDICTED: transcription factor VOZ1 isoform X1 [Jatropha curcas]
14 Hb_159809_070 0.0665328529 - - phospholipase A-2-activating protein, putative [Ricinus communis]
15 Hb_000702_090 0.0674738964 - - 26S proteasome non-ATPase regulatory subunit 11 [Theobroma cacao]
16 Hb_000078_140 0.0679768061 - - PREDICTED: WD repeat-containing protein 11 [Jatropha curcas]
17 Hb_005489_040 0.0680189571 - - PREDICTED: cullin-1 [Jatropha curcas]
18 Hb_006824_010 0.068964019 - - PREDICTED: origin of replication complex subunit 4 [Jatropha curcas]
19 Hb_027506_010 0.0693013462 - - PREDICTED: cullin-4 [Jatropha curcas]
20 Hb_073171_070 0.0698441075 - - PREDICTED: RNA polymerase II-associated factor 1 homolog [Jatropha curcas]

Gene co-expression network

sample Hb_006189_020 Hb_006189_020 Hb_033312_040 Hb_033312_040 Hb_006189_020--Hb_033312_040 Hb_000409_050 Hb_000409_050 Hb_006189_020--Hb_000409_050 Hb_004333_040 Hb_004333_040 Hb_006189_020--Hb_004333_040 Hb_001817_170 Hb_001817_170 Hb_006189_020--Hb_001817_170 Hb_000510_360 Hb_000510_360 Hb_006189_020--Hb_000510_360 Hb_000139_080 Hb_000139_080 Hb_006189_020--Hb_000139_080 Hb_033312_040--Hb_000510_360 Hb_001481_060 Hb_001481_060 Hb_033312_040--Hb_001481_060 Hb_033312_040--Hb_000139_080 Hb_033312_040--Hb_004333_040 Hb_003098_070 Hb_003098_070 Hb_033312_040--Hb_003098_070 Hb_005489_040 Hb_005489_040 Hb_000409_050--Hb_005489_040 Hb_000773_040 Hb_000773_040 Hb_000409_050--Hb_000773_040 Hb_027506_010 Hb_027506_010 Hb_000409_050--Hb_027506_010 Hb_016172_030 Hb_016172_030 Hb_000409_050--Hb_016172_030 Hb_060980_010 Hb_060980_010 Hb_000409_050--Hb_060980_010 Hb_000189_600 Hb_000189_600 Hb_004333_040--Hb_000189_600 Hb_000699_150 Hb_000699_150 Hb_004333_040--Hb_000699_150 Hb_004333_040--Hb_000510_360 Hb_183433_010 Hb_183433_010 Hb_004333_040--Hb_183433_010 Hb_003758_010 Hb_003758_010 Hb_001817_170--Hb_003758_010 Hb_002042_050 Hb_002042_050 Hb_001817_170--Hb_002042_050 Hb_003626_070 Hb_003626_070 Hb_001817_170--Hb_003626_070 Hb_002071_070 Hb_002071_070 Hb_001817_170--Hb_002071_070 Hb_001817_170--Hb_000139_080 Hb_000085_170 Hb_000085_170 Hb_000510_360--Hb_000085_170 Hb_000510_360--Hb_003758_010 Hb_000321_140 Hb_000321_140 Hb_000510_360--Hb_000321_140 Hb_000510_360--Hb_001817_170 Hb_000139_080--Hb_003098_070 Hb_000078_140 Hb_000078_140 Hb_000139_080--Hb_000078_140 Hb_000139_080--Hb_003626_070 Hb_000169_020 Hb_000169_020 Hb_000139_080--Hb_000169_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
11.4378 17.0604 24.4812 20.9445 13.0673 11.635
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
13.6228 12.2329 12.3396 22.5427 22.0375

CAGE analysis