Hb_003626_070

Information

Type -
Description -
Location Contig3626: 65376-74214
Sequence    

Annotation

kegg
ID rcu:RCOM_1050170
description Golgin-84, putative
nr
ID XP_012076781.1
description PREDICTED: golgin candidate 1 [Jatropha curcas]
swissprot
ID Q8S8N9
description Golgin candidate 1 OS=Arabidopsis thaliana GN=GC1 PE=2 SV=2
trembl
ID A0A067KFJ6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07304 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_37252: 65447-72232 , PASA_asmbl_37253: 65826-72232 , PASA_asmbl_37254: 67820-68562 , PASA_asmbl_37255: 72276-74041
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003626_070 0.0 - - PREDICTED: golgin candidate 1 [Jatropha curcas]
2 Hb_001817_170 0.0589868302 - - PREDICTED: AP-1 complex subunit gamma-2-like [Jatropha curcas]
3 Hb_000139_080 0.0611883971 - - PREDICTED: vacuole membrane protein KMS1 isoform X2 [Jatropha curcas]
4 Hb_001635_110 0.0614821482 - - PREDICTED: NADP-specific glutamate dehydrogenase [Jatropha curcas]
5 Hb_006189_020 0.0700071542 - - PREDICTED: mitogen-activated protein kinase kinase kinase YODA [Jatropha curcas]
6 Hb_000476_060 0.0713807118 - - Tetratricopeptide repeat (TPR)-like superfamily protein isoform 1 [Theobroma cacao]
7 Hb_000103_290 0.071716985 - - PREDICTED: dymeclin isoform X1 [Jatropha curcas]
8 Hb_000703_190 0.0717576715 - - PREDICTED: serine/threonine-protein kinase EDR1 isoform X1 [Jatropha curcas]
9 Hb_003913_020 0.0737739208 - - PREDICTED: C2 and GRAM domain-containing protein At5g50170 [Jatropha curcas]
10 Hb_006100_020 0.0741903413 - - PREDICTED: inactive poly [ADP-ribose] polymerase RCD1 [Jatropha curcas]
11 Hb_000510_360 0.0751239022 transcription factor TF Family: GNAT PREDICTED: histone acetyltransferase GCN5 [Jatropha curcas]
12 Hb_005214_140 0.0753252309 - - PREDICTED: transcription factor GTE2-like [Jatropha curcas]
13 Hb_003758_010 0.0754873141 transcription factor TF Family: VOZ PREDICTED: transcription factor VOZ1 isoform X1 [Jatropha curcas]
14 Hb_016172_030 0.077306684 - - PREDICTED: probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SEC [Jatropha curcas]
15 Hb_033312_040 0.0773937043 - - PREDICTED: gamma-tubulin complex component 5-like isoform X1 [Jatropha curcas]
16 Hb_002042_050 0.078181201 - - PREDICTED: uncharacterized protein LOC105647554 isoform X1 [Jatropha curcas]
17 Hb_000567_230 0.0783676689 - - PREDICTED: peroxisome biogenesis protein 7 [Jatropha curcas]
18 Hb_000173_190 0.0789787091 - - conserved hypothetical protein [Ricinus communis]
19 Hb_003098_070 0.0823506583 - - PREDICTED: uncharacterized protein LOC105633456 [Jatropha curcas]
20 Hb_007839_020 0.0828800825 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_003626_070 Hb_003626_070 Hb_001817_170 Hb_001817_170 Hb_003626_070--Hb_001817_170 Hb_000139_080 Hb_000139_080 Hb_003626_070--Hb_000139_080 Hb_001635_110 Hb_001635_110 Hb_003626_070--Hb_001635_110 Hb_006189_020 Hb_006189_020 Hb_003626_070--Hb_006189_020 Hb_000476_060 Hb_000476_060 Hb_003626_070--Hb_000476_060 Hb_000103_290 Hb_000103_290 Hb_003626_070--Hb_000103_290 Hb_003758_010 Hb_003758_010 Hb_001817_170--Hb_003758_010 Hb_001817_170--Hb_006189_020 Hb_002042_050 Hb_002042_050 Hb_001817_170--Hb_002042_050 Hb_002071_070 Hb_002071_070 Hb_001817_170--Hb_002071_070 Hb_001817_170--Hb_000139_080 Hb_003098_070 Hb_003098_070 Hb_000139_080--Hb_003098_070 Hb_033312_040 Hb_033312_040 Hb_000139_080--Hb_033312_040 Hb_000078_140 Hb_000078_140 Hb_000139_080--Hb_000078_140 Hb_000139_080--Hb_006189_020 Hb_000169_020 Hb_000169_020 Hb_000139_080--Hb_000169_020 Hb_178968_060 Hb_178968_060 Hb_001635_110--Hb_178968_060 Hb_008304_020 Hb_008304_020 Hb_001635_110--Hb_008304_020 Hb_000173_190 Hb_000173_190 Hb_001635_110--Hb_000173_190 Hb_001300_280 Hb_001300_280 Hb_001635_110--Hb_001300_280 Hb_001635_110--Hb_006189_020 Hb_001635_110--Hb_003098_070 Hb_006189_020--Hb_033312_040 Hb_000409_050 Hb_000409_050 Hb_006189_020--Hb_000409_050 Hb_004333_040 Hb_004333_040 Hb_006189_020--Hb_004333_040 Hb_000510_360 Hb_000510_360 Hb_006189_020--Hb_000510_360 Hb_000476_060--Hb_003098_070 Hb_089839_010 Hb_089839_010 Hb_000476_060--Hb_089839_010 Hb_000476_060--Hb_001635_110 Hb_000788_030 Hb_000788_030 Hb_000476_060--Hb_000788_030 Hb_004324_360 Hb_004324_360 Hb_000476_060--Hb_004324_360 Hb_000120_890 Hb_000120_890 Hb_000476_060--Hb_000120_890 Hb_048476_080 Hb_048476_080 Hb_000103_290--Hb_048476_080 Hb_016172_030 Hb_016172_030 Hb_000103_290--Hb_016172_030 Hb_000954_010 Hb_000954_010 Hb_000103_290--Hb_000954_010 Hb_060980_010 Hb_060980_010 Hb_000103_290--Hb_060980_010 Hb_027506_010 Hb_027506_010 Hb_000103_290--Hb_027506_010 Hb_024650_080 Hb_024650_080 Hb_000103_290--Hb_024650_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.03215 9.15347 9.84616 10.4649 5.64708 3.58755
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.57864 4.74898 4.89843 7.04475 9.05648

CAGE analysis