Hb_004324_360

Information

Type -
Description -
Location Contig4324: 225451-229173
Sequence    

Annotation

kegg
ID rcu:RCOM_1581370
description hypothetical protein
nr
ID XP_012092893.1
description PREDICTED: uncharacterized protein LOC105650600 isoform X1 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067J8T6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_00035 PE=4 SV=1
Gene Ontology
ID GO:0006259
description lim domain-containing protein isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_42342: 225826-226060 , PASA_asmbl_42343: 226141-226563 , PASA_asmbl_42345: 227241-227703 , PASA_asmbl_42346: 227877-228914
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004324_360 0.0 - - PREDICTED: uncharacterized protein LOC105650600 isoform X1 [Jatropha curcas]
2 Hb_002684_020 0.0588189294 - - ATP-dependent clp protease ATP-binding subunit clpx, putative [Ricinus communis]
3 Hb_000975_210 0.0601334681 - - PREDICTED: THO complex subunit 4A [Jatropha curcas]
4 Hb_000788_030 0.0614124835 - - PREDICTED: dynamin-2A [Jatropha curcas]
5 Hb_001488_020 0.0644706238 - - PREDICTED: probable mitochondrial-processing peptidase subunit beta [Jatropha curcas]
6 Hb_000476_060 0.0654919558 - - Tetratricopeptide repeat (TPR)-like superfamily protein isoform 1 [Theobroma cacao]
7 Hb_033312_040 0.0657170958 - - PREDICTED: gamma-tubulin complex component 5-like isoform X1 [Jatropha curcas]
8 Hb_000270_190 0.067351936 transcription factor TF Family: DDT tRNA ligase, putative [Ricinus communis]
9 Hb_000139_080 0.0674671503 - - PREDICTED: vacuole membrane protein KMS1 isoform X2 [Jatropha curcas]
10 Hb_003098_070 0.0678166015 - - PREDICTED: uncharacterized protein LOC105633456 [Jatropha curcas]
11 Hb_000748_090 0.0698192061 - - glucose inhibited division protein A, putative [Ricinus communis]
12 Hb_087313_010 0.070546148 - - conserved hypothetical protein [Ricinus communis]
13 Hb_004774_090 0.0709648167 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance protein At4g27190-like [Jatropha curcas]
14 Hb_000169_020 0.071163082 transcription factor TF Family: C2C2-CO-like hypothetical protein RCOM_0555710 [Ricinus communis]
15 Hb_003758_010 0.0723354517 transcription factor TF Family: VOZ PREDICTED: transcription factor VOZ1 isoform X1 [Jatropha curcas]
16 Hb_073171_070 0.0728733366 - - PREDICTED: RNA polymerase II-associated factor 1 homolog [Jatropha curcas]
17 Hb_006100_020 0.0748092307 - - PREDICTED: inactive poly [ADP-ribose] polymerase RCD1 [Jatropha curcas]
18 Hb_000510_360 0.0752569524 transcription factor TF Family: GNAT PREDICTED: histone acetyltransferase GCN5 [Jatropha curcas]
19 Hb_005214_140 0.0764628102 - - PREDICTED: transcription factor GTE2-like [Jatropha curcas]
20 Hb_007012_030 0.0776151322 - - PREDICTED: transmembrane and coiled-coil domain-containing protein 4-like isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_004324_360 Hb_004324_360 Hb_002684_020 Hb_002684_020 Hb_004324_360--Hb_002684_020 Hb_000975_210 Hb_000975_210 Hb_004324_360--Hb_000975_210 Hb_000788_030 Hb_000788_030 Hb_004324_360--Hb_000788_030 Hb_001488_020 Hb_001488_020 Hb_004324_360--Hb_001488_020 Hb_000476_060 Hb_000476_060 Hb_004324_360--Hb_000476_060 Hb_033312_040 Hb_033312_040 Hb_004324_360--Hb_033312_040 Hb_006970_020 Hb_006970_020 Hb_002684_020--Hb_006970_020 Hb_021596_020 Hb_021596_020 Hb_002684_020--Hb_021596_020 Hb_002684_020--Hb_000788_030 Hb_000815_300 Hb_000815_300 Hb_002684_020--Hb_000815_300 Hb_012438_030 Hb_012438_030 Hb_002684_020--Hb_012438_030 Hb_000445_060 Hb_000445_060 Hb_000975_210--Hb_000445_060 Hb_000868_120 Hb_000868_120 Hb_000975_210--Hb_000868_120 Hb_000975_210--Hb_000476_060 Hb_033642_120 Hb_033642_120 Hb_000975_210--Hb_033642_120 Hb_004774_090 Hb_004774_090 Hb_000975_210--Hb_004774_090 Hb_001703_040 Hb_001703_040 Hb_000788_030--Hb_001703_040 Hb_000788_030--Hb_000476_060 Hb_087313_010 Hb_087313_010 Hb_000788_030--Hb_087313_010 Hb_006846_170 Hb_006846_170 Hb_000788_030--Hb_006846_170 Hb_000270_170 Hb_000270_170 Hb_001488_020--Hb_000270_170 Hb_001817_170 Hb_001817_170 Hb_001488_020--Hb_001817_170 Hb_006100_020 Hb_006100_020 Hb_001488_020--Hb_006100_020 Hb_003758_010 Hb_003758_010 Hb_001488_020--Hb_003758_010 Hb_073171_070 Hb_073171_070 Hb_001488_020--Hb_073171_070 Hb_003098_070 Hb_003098_070 Hb_000476_060--Hb_003098_070 Hb_089839_010 Hb_089839_010 Hb_000476_060--Hb_089839_010 Hb_001635_110 Hb_001635_110 Hb_000476_060--Hb_001635_110 Hb_000120_890 Hb_000120_890 Hb_000476_060--Hb_000120_890 Hb_006189_020 Hb_006189_020 Hb_033312_040--Hb_006189_020 Hb_000510_360 Hb_000510_360 Hb_033312_040--Hb_000510_360 Hb_001481_060 Hb_001481_060 Hb_033312_040--Hb_001481_060 Hb_000139_080 Hb_000139_080 Hb_033312_040--Hb_000139_080 Hb_004333_040 Hb_004333_040 Hb_033312_040--Hb_004333_040 Hb_033312_040--Hb_003098_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.597849 1.06195 1.58299 1.05978 0.590682 0.684969
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.530865 0.541948 0.669654 0.931399 1.51793

CAGE analysis