Hb_012438_030

Information

Type -
Description -
Location Contig12438: 41585-44822
Sequence    

Annotation

kegg
ID pop:POPTR_0006s03100g
description POPTRDRAFT_818987; hypothetical protein
nr
ID XP_012072614.1
description PREDICTED: protein sym-1 [Jatropha curcas]
swissprot
ID Q54FR4
description PXMP2/4 family protein 4 OS=Dictyostelium discoideum GN=DDB_G0290631 PE=3 SV=1
trembl
ID A0A067KNN8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_06396 PE=4 SV=1
Gene Ontology
ID GO:0009941
description protein sym-1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_07404: 41760-44737
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_012438_030 0.0 - - PREDICTED: protein sym-1 [Jatropha curcas]
2 Hb_087313_010 0.0509432762 - - conserved hypothetical protein [Ricinus communis]
3 Hb_001703_040 0.0609423665 - - PREDICTED: uncharacterized protein At1g04910 isoform X2 [Jatropha curcas]
4 Hb_002218_020 0.0631485274 - - PREDICTED: AT-hook motif nuclear-localized protein 14 [Jatropha curcas]
5 Hb_000163_260 0.0722686039 - - PREDICTED: uncharacterized protein LOC105642518 [Jatropha curcas]
6 Hb_002876_300 0.0740999944 - - PREDICTED: histidinol-phosphate aminotransferase, chloroplastic-like [Jatropha curcas]
7 Hb_102948_010 0.0754126105 transcription factor TF Family: ARID PREDICTED: AT-rich interactive domain-containing protein 5 isoform X2 [Jatropha curcas]
8 Hb_016448_010 0.0755172181 - - Protein MYG1, putative [Ricinus communis]
9 Hb_002684_020 0.0759805978 - - ATP-dependent clp protease ATP-binding subunit clpx, putative [Ricinus communis]
10 Hb_021596_020 0.0784953752 - - hypothetical protein JCGZ_02034 [Jatropha curcas]
11 Hb_002631_240 0.0796446135 - - JHL17M24.3 [Jatropha curcas]
12 Hb_005946_040 0.0804324401 - - PREDICTED: probable protein phosphatase 2C 22 isoform X2 [Jatropha curcas]
13 Hb_009476_130 0.0805203328 - - hypothetical protein VITISV_005430 [Vitis vinifera]
14 Hb_004109_120 0.0810661957 - - PREDICTED: kinesin-related protein 6 isoform X1 [Jatropha curcas]
15 Hb_004324_360 0.0810871972 - - PREDICTED: uncharacterized protein LOC105650600 isoform X1 [Jatropha curcas]
16 Hb_000788_030 0.0814860623 - - PREDICTED: dynamin-2A [Jatropha curcas]
17 Hb_001504_010 0.0815226837 - - PREDICTED: uncharacterized protein LOC105645377 [Jatropha curcas]
18 Hb_000826_030 0.0832612149 - - PREDICTED: putative tRNA pseudouridine synthase isoform X1 [Jatropha curcas]
19 Hb_005162_110 0.0838713456 - - PREDICTED: uncharacterized protein LOC105648430 [Jatropha curcas]
20 Hb_000254_100 0.0873481904 - - PREDICTED: glyoxylate/hydroxypyruvate reductase A HPR2 [Jatropha curcas]

Gene co-expression network

sample Hb_012438_030 Hb_012438_030 Hb_087313_010 Hb_087313_010 Hb_012438_030--Hb_087313_010 Hb_001703_040 Hb_001703_040 Hb_012438_030--Hb_001703_040 Hb_002218_020 Hb_002218_020 Hb_012438_030--Hb_002218_020 Hb_000163_260 Hb_000163_260 Hb_012438_030--Hb_000163_260 Hb_002876_300 Hb_002876_300 Hb_012438_030--Hb_002876_300 Hb_102948_010 Hb_102948_010 Hb_012438_030--Hb_102948_010 Hb_087313_010--Hb_002218_020 Hb_087313_010--Hb_001703_040 Hb_000788_030 Hb_000788_030 Hb_087313_010--Hb_000788_030 Hb_087313_010--Hb_102948_010 Hb_004324_360 Hb_004324_360 Hb_087313_010--Hb_004324_360 Hb_001703_040--Hb_000788_030 Hb_002631_240 Hb_002631_240 Hb_001703_040--Hb_002631_240 Hb_001504_010 Hb_001504_010 Hb_001703_040--Hb_001504_010 Hb_000120_890 Hb_000120_890 Hb_001703_040--Hb_000120_890 Hb_002218_020--Hb_102948_010 Hb_001430_020 Hb_001430_020 Hb_002218_020--Hb_001430_020 Hb_000663_020 Hb_000663_020 Hb_002218_020--Hb_000663_020 Hb_003883_010 Hb_003883_010 Hb_002218_020--Hb_003883_010 Hb_000163_260--Hb_001504_010 Hb_001882_010 Hb_001882_010 Hb_000163_260--Hb_001882_010 Hb_009476_130 Hb_009476_130 Hb_000163_260--Hb_009476_130 Hb_000163_260--Hb_001703_040 Hb_000163_260--Hb_000120_890 Hb_030414_040 Hb_030414_040 Hb_002876_300--Hb_030414_040 Hb_000826_030 Hb_000826_030 Hb_002876_300--Hb_000826_030 Hb_000035_090 Hb_000035_090 Hb_002876_300--Hb_000035_090 Hb_005946_040 Hb_005946_040 Hb_002876_300--Hb_005946_040 Hb_113853_010 Hb_113853_010 Hb_002876_300--Hb_113853_010 Hb_102948_010--Hb_001430_020 Hb_005235_070 Hb_005235_070 Hb_102948_010--Hb_005235_070 Hb_000555_020 Hb_000555_020 Hb_102948_010--Hb_000555_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.6996 9.45944 25.2932 11.5814 6.17118 7.86921
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.33656 7.01228 6.85058 8.52802 16.5557

CAGE analysis