Hb_087313_010

Information

Type -
Description -
Location Contig87313: 27573-33323
Sequence    

Annotation

kegg
ID rcu:RCOM_0926490
description hypothetical protein
nr
ID XP_002515582.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q9LHF5
description VIN3-like protein 1 OS=Arabidopsis thaliana GN=VIL1 PE=1 SV=1
trembl
ID B9RPB3
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0926490 PE=4 SV=1
Gene Ontology
ID GO:0005515
description vin3-like protein 1 isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_61217: 27728-32444
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_087313_010 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_012438_030 0.0509432762 - - PREDICTED: protein sym-1 [Jatropha curcas]
3 Hb_002218_020 0.0664550772 - - PREDICTED: AT-hook motif nuclear-localized protein 14 [Jatropha curcas]
4 Hb_001703_040 0.0676749124 - - PREDICTED: uncharacterized protein At1g04910 isoform X2 [Jatropha curcas]
5 Hb_000788_030 0.0676814434 - - PREDICTED: dynamin-2A [Jatropha curcas]
6 Hb_102948_010 0.0681891952 transcription factor TF Family: ARID PREDICTED: AT-rich interactive domain-containing protein 5 isoform X2 [Jatropha curcas]
7 Hb_004324_360 0.070546148 - - PREDICTED: uncharacterized protein LOC105650600 isoform X1 [Jatropha curcas]
8 Hb_000975_210 0.0752827096 - - PREDICTED: THO complex subunit 4A [Jatropha curcas]
9 Hb_000254_100 0.0787044668 - - PREDICTED: glyoxylate/hydroxypyruvate reductase A HPR2 [Jatropha curcas]
10 Hb_003506_030 0.0791264224 - - PREDICTED: ATP-dependent Clp protease ATP-binding subunit clpX-like, mitochondrial isoform X2 [Jatropha curcas]
11 Hb_002876_300 0.0794944934 - - PREDICTED: histidinol-phosphate aminotransferase, chloroplastic-like [Jatropha curcas]
12 Hb_004096_240 0.0799725018 - - PREDICTED: uncharacterized protein LOC105638702 [Jatropha curcas]
13 Hb_000003_680 0.0806138958 transcription factor TF Family: MYB-related PREDICTED: myb-like protein H [Jatropha curcas]
14 Hb_030414_040 0.0807415153 transcription factor TF Family: SET PREDICTED: histone-lysine N-methyltransferase ASHH3 isoform X1 [Jatropha curcas]
15 Hb_000035_090 0.0816384698 - - PREDICTED: stromal cell-derived factor 2-like protein [Jatropha curcas]
16 Hb_000663_020 0.0846754658 - - PREDICTED: alternative NAD(P)H-ubiquinone oxidoreductase C1, chloroplastic/mitochondrial isoform X1 [Jatropha curcas]
17 Hb_002631_240 0.0848257523 - - JHL17M24.3 [Jatropha curcas]
18 Hb_000476_060 0.085026179 - - Tetratricopeptide repeat (TPR)-like superfamily protein isoform 1 [Theobroma cacao]
19 Hb_003228_100 0.0851992998 - - PREDICTED: kinesin-related protein 4 [Jatropha curcas]
20 Hb_002684_020 0.0853471643 - - ATP-dependent clp protease ATP-binding subunit clpx, putative [Ricinus communis]

Gene co-expression network

sample Hb_087313_010 Hb_087313_010 Hb_012438_030 Hb_012438_030 Hb_087313_010--Hb_012438_030 Hb_002218_020 Hb_002218_020 Hb_087313_010--Hb_002218_020 Hb_001703_040 Hb_001703_040 Hb_087313_010--Hb_001703_040 Hb_000788_030 Hb_000788_030 Hb_087313_010--Hb_000788_030 Hb_102948_010 Hb_102948_010 Hb_087313_010--Hb_102948_010 Hb_004324_360 Hb_004324_360 Hb_087313_010--Hb_004324_360 Hb_012438_030--Hb_001703_040 Hb_012438_030--Hb_002218_020 Hb_000163_260 Hb_000163_260 Hb_012438_030--Hb_000163_260 Hb_002876_300 Hb_002876_300 Hb_012438_030--Hb_002876_300 Hb_012438_030--Hb_102948_010 Hb_002218_020--Hb_102948_010 Hb_001430_020 Hb_001430_020 Hb_002218_020--Hb_001430_020 Hb_000663_020 Hb_000663_020 Hb_002218_020--Hb_000663_020 Hb_003883_010 Hb_003883_010 Hb_002218_020--Hb_003883_010 Hb_001703_040--Hb_000788_030 Hb_002631_240 Hb_002631_240 Hb_001703_040--Hb_002631_240 Hb_001504_010 Hb_001504_010 Hb_001703_040--Hb_001504_010 Hb_000120_890 Hb_000120_890 Hb_001703_040--Hb_000120_890 Hb_000788_030--Hb_004324_360 Hb_000476_060 Hb_000476_060 Hb_000788_030--Hb_000476_060 Hb_002684_020 Hb_002684_020 Hb_000788_030--Hb_002684_020 Hb_006846_170 Hb_006846_170 Hb_000788_030--Hb_006846_170 Hb_102948_010--Hb_001430_020 Hb_005235_070 Hb_005235_070 Hb_102948_010--Hb_005235_070 Hb_000555_020 Hb_000555_020 Hb_102948_010--Hb_000555_020 Hb_004324_360--Hb_002684_020 Hb_000975_210 Hb_000975_210 Hb_004324_360--Hb_000975_210 Hb_001488_020 Hb_001488_020 Hb_004324_360--Hb_001488_020 Hb_004324_360--Hb_000476_060 Hb_033312_040 Hb_033312_040 Hb_004324_360--Hb_033312_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
10.35 12.4434 23.4908 13.3338 7.44314 8.28172
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.58935 7.75851 7.29954 8.04336 17.922

CAGE analysis