Hb_003883_010

Information

Type -
Description -
Location Contig3883: 40629-45768
Sequence    

Annotation

kegg
ID vvi:100246039
description glycine-rich RNA-binding protein 3, mitochondrial
nr
ID XP_012079226.1
description PREDICTED: cold-inducible RNA-binding protein [Jatropha curcas]
swissprot
ID Q9LIN3
description Glycine-rich RNA-binding protein RZ1A OS=Arabidopsis thaliana GN=RZ1A PE=1 SV=1
trembl
ID A0A067LMZ6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17406 PE=4 SV=1
Gene Ontology
ID GO:0009507
description glycine-rich rna-binding protein mitochondrial

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_38936: 40669-45841
cDNA
(Sanger)
(ID:Location)		 024_E09.ab1: 41835-45839

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003883_010 0.0 - - PREDICTED: cold-inducible RNA-binding protein [Jatropha curcas]
2 Hb_002107_050 0.056301726 - - PREDICTED: prostaglandin E synthase 2 [Jatropha curcas]
3 Hb_000680_010 0.0635238016 - - PREDICTED: putative hydrolase C777.06c [Populus euphratica]
4 Hb_002915_010 0.0697528606 - - PREDICTED: transcriptional activator DEMETER isoform X1 [Jatropha curcas]
5 Hb_005235_070 0.0716384758 - - PREDICTED: plastid lipid-associated protein 3, chloroplastic [Jatropha curcas]
6 Hb_002218_020 0.0747275513 - - PREDICTED: AT-hook motif nuclear-localized protein 14 [Jatropha curcas]
7 Hb_000318_220 0.0767388266 - - conserved hypothetical protein [Ricinus communis]
8 Hb_160271_010 0.077914254 - - PREDICTED: FAD synthase-like isoform X2 [Jatropha curcas]
9 Hb_001430_020 0.0848974131 - - Actin-like ATPase superfamily protein isoform 1 [Theobroma cacao]
10 Hb_012779_080 0.0859998291 - - PREDICTED: carbon catabolite repressor protein 4 homolog 3 isoform X3 [Jatropha curcas]
11 Hb_102948_010 0.088074434 transcription factor TF Family: ARID PREDICTED: AT-rich interactive domain-containing protein 5 isoform X2 [Jatropha curcas]
12 Hb_000291_180 0.0904607488 - - PREDICTED: meiotically up-regulated gene 185 protein [Jatropha curcas]
13 Hb_010620_050 0.0935668243 - - PREDICTED: uncharacterized protein LOC105646119 [Jatropha curcas]
14 Hb_002631_240 0.0937810875 - - JHL17M24.3 [Jatropha curcas]
15 Hb_000555_020 0.0951416501 - - APO protein 2, chloroplast precursor, putative [Ricinus communis]
16 Hb_000003_680 0.0965084659 transcription factor TF Family: MYB-related PREDICTED: myb-like protein H [Jatropha curcas]
17 Hb_000016_310 0.096916165 - - protein binding protein, putative [Ricinus communis]
18 Hb_000320_190 0.0975294611 - - PREDICTED: aminomethyltransferase, mitochondrial [Jatropha curcas]
19 Hb_005665_090 0.0984980251 - - PREDICTED: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase isoform X2 [Jatropha curcas]
20 Hb_000327_330 0.0993295984 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_003883_010 Hb_003883_010 Hb_002107_050 Hb_002107_050 Hb_003883_010--Hb_002107_050 Hb_000680_010 Hb_000680_010 Hb_003883_010--Hb_000680_010 Hb_002915_010 Hb_002915_010 Hb_003883_010--Hb_002915_010 Hb_005235_070 Hb_005235_070 Hb_003883_010--Hb_005235_070 Hb_002218_020 Hb_002218_020 Hb_003883_010--Hb_002218_020 Hb_000318_220 Hb_000318_220 Hb_003883_010--Hb_000318_220 Hb_010620_050 Hb_010620_050 Hb_002107_050--Hb_010620_050 Hb_003071_030 Hb_003071_030 Hb_002107_050--Hb_003071_030 Hb_160271_010 Hb_160271_010 Hb_002107_050--Hb_160271_010 Hb_002107_050--Hb_005235_070 Hb_012779_080 Hb_012779_080 Hb_002107_050--Hb_012779_080 Hb_000680_010--Hb_160271_010 Hb_000291_180 Hb_000291_180 Hb_000680_010--Hb_000291_180 Hb_000680_010--Hb_002915_010 Hb_000680_010--Hb_002107_050 Hb_000320_190 Hb_000320_190 Hb_000680_010--Hb_000320_190 Hb_002915_010--Hb_012779_080 Hb_002915_010--Hb_000320_190 Hb_002915_010--Hb_002107_050 Hb_000094_100 Hb_000094_100 Hb_002915_010--Hb_000094_100 Hb_000555_020 Hb_000555_020 Hb_005235_070--Hb_000555_020 Hb_102948_010 Hb_102948_010 Hb_005235_070--Hb_102948_010 Hb_000107_340 Hb_000107_340 Hb_005235_070--Hb_000107_340 Hb_005235_070--Hb_002218_020 Hb_002218_020--Hb_102948_010 Hb_001430_020 Hb_001430_020 Hb_002218_020--Hb_001430_020 Hb_012438_030 Hb_012438_030 Hb_002218_020--Hb_012438_030 Hb_087313_010 Hb_087313_010 Hb_002218_020--Hb_087313_010 Hb_000663_020 Hb_000663_020 Hb_002218_020--Hb_000663_020 Hb_000327_330 Hb_000327_330 Hb_000318_220--Hb_000327_330 Hb_001799_160 Hb_001799_160 Hb_000318_220--Hb_001799_160 Hb_000318_220--Hb_002218_020 Hb_001504_010 Hb_001504_010 Hb_000318_220--Hb_001504_010 Hb_001053_190 Hb_001053_190 Hb_000318_220--Hb_001053_190
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.46847 11.4711 30.7806 17.84 6.55737 5.68229
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.74783 10.7357 6.48177 5.34541 25.9161

CAGE analysis