Hb_001430_020

Information

Type -
Description -
Location Contig1430: 18590-21743
Sequence    

Annotation

kegg
ID tcc:TCM_027288
description Actin-like ATPase superfamily protein isoform 1
nr
ID XP_007023294.1
description Actin-like ATPase superfamily protein isoform 1 [Theobroma cacao]
swissprot
ID Q9M8L4
description Glycerol kinase OS=Arabidopsis thaliana GN=GLPK PE=1 SV=1
trembl
ID A0A061G8K8
description Actin-like ATPase superfamily protein isoform 1 OS=Theobroma cacao GN=TCM_027288 PE=3 SV=1
Gene Ontology
ID GO:0004370
description glycerol kinase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_11357: 18589-21396
cDNA
(Sanger)
(ID:Location)		 011_K15.ab1: 18589-18888 , 043_E23.ab1: 20137-21387

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001430_020 0.0 - - Actin-like ATPase superfamily protein isoform 1 [Theobroma cacao]
2 Hb_102948_010 0.0410293425 transcription factor TF Family: ARID PREDICTED: AT-rich interactive domain-containing protein 5 isoform X2 [Jatropha curcas]
3 Hb_002218_020 0.0567948215 - - PREDICTED: AT-hook motif nuclear-localized protein 14 [Jatropha curcas]
4 Hb_000802_130 0.0829062365 - - hypothetical protein JCGZ_04636 [Jatropha curcas]
5 Hb_003883_010 0.0848974131 - - PREDICTED: cold-inducible RNA-binding protein [Jatropha curcas]
6 Hb_005235_070 0.0863692538 - - PREDICTED: plastid lipid-associated protein 3, chloroplastic [Jatropha curcas]
7 Hb_000555_020 0.0882776524 - - APO protein 2, chloroplast precursor, putative [Ricinus communis]
8 Hb_000320_190 0.0883180267 - - PREDICTED: aminomethyltransferase, mitochondrial [Jatropha curcas]
9 Hb_002915_010 0.0888089028 - - PREDICTED: transcriptional activator DEMETER isoform X1 [Jatropha curcas]
10 Hb_012438_030 0.0897314773 - - PREDICTED: protein sym-1 [Jatropha curcas]
11 Hb_087313_010 0.0935566907 - - conserved hypothetical protein [Ricinus communis]
12 Hb_000011_240 0.0965095419 - - PREDICTED: uncharacterized protein LOC105631316 [Jatropha curcas]
13 Hb_012779_080 0.0988448861 - - PREDICTED: carbon catabolite repressor protein 4 homolog 3 isoform X3 [Jatropha curcas]
14 Hb_005217_030 0.0995444367 - - PREDICTED: probable transcriptional regulator SLK3 [Jatropha curcas]
15 Hb_000003_680 0.1010927322 transcription factor TF Family: MYB-related PREDICTED: myb-like protein H [Jatropha curcas]
16 Hb_000291_180 0.1016875828 - - PREDICTED: meiotically up-regulated gene 185 protein [Jatropha curcas]
17 Hb_009847_030 0.101846761 - - zinc finger family protein [Populus trichocarpa]
18 Hb_002107_050 0.1021786196 - - PREDICTED: prostaglandin E synthase 2 [Jatropha curcas]
19 Hb_160271_010 0.1029463714 - - PREDICTED: FAD synthase-like isoform X2 [Jatropha curcas]
20 Hb_001409_060 0.1034217381 transcription factor TF Family: TRAF Regulatory protein NPR1, putative [Ricinus communis]

Gene co-expression network

sample Hb_001430_020 Hb_001430_020 Hb_102948_010 Hb_102948_010 Hb_001430_020--Hb_102948_010 Hb_002218_020 Hb_002218_020 Hb_001430_020--Hb_002218_020 Hb_000802_130 Hb_000802_130 Hb_001430_020--Hb_000802_130 Hb_003883_010 Hb_003883_010 Hb_001430_020--Hb_003883_010 Hb_005235_070 Hb_005235_070 Hb_001430_020--Hb_005235_070 Hb_000555_020 Hb_000555_020 Hb_001430_020--Hb_000555_020 Hb_102948_010--Hb_002218_020 Hb_087313_010 Hb_087313_010 Hb_102948_010--Hb_087313_010 Hb_102948_010--Hb_005235_070 Hb_012438_030 Hb_012438_030 Hb_102948_010--Hb_012438_030 Hb_102948_010--Hb_000555_020 Hb_002218_020--Hb_012438_030 Hb_002218_020--Hb_087313_010 Hb_000663_020 Hb_000663_020 Hb_002218_020--Hb_000663_020 Hb_002218_020--Hb_003883_010 Hb_000613_120 Hb_000613_120 Hb_000802_130--Hb_000613_120 Hb_021650_010 Hb_021650_010 Hb_000802_130--Hb_021650_010 Hb_004109_260 Hb_004109_260 Hb_000802_130--Hb_004109_260 Hb_011861_050 Hb_011861_050 Hb_000802_130--Hb_011861_050 Hb_000802_130--Hb_102948_010 Hb_002107_050 Hb_002107_050 Hb_003883_010--Hb_002107_050 Hb_000680_010 Hb_000680_010 Hb_003883_010--Hb_000680_010 Hb_002915_010 Hb_002915_010 Hb_003883_010--Hb_002915_010 Hb_003883_010--Hb_005235_070 Hb_000318_220 Hb_000318_220 Hb_003883_010--Hb_000318_220 Hb_005235_070--Hb_000555_020 Hb_000107_340 Hb_000107_340 Hb_005235_070--Hb_000107_340 Hb_005235_070--Hb_002218_020 Hb_005235_070--Hb_002107_050 Hb_000555_020--Hb_000107_340 Hb_002150_140 Hb_002150_140 Hb_000555_020--Hb_002150_140 Hb_114310_070 Hb_114310_070 Hb_000555_020--Hb_114310_070 Hb_000311_120 Hb_000311_120 Hb_000555_020--Hb_000311_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
22.1415 36.3692 82.5765 31.5051 16.7346 20.9047
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
24.5106 20.8673 18.9913 13.3128 65.0747

CAGE analysis