Hb_002915_010

Information

Type -
Description -
Location Contig2915: 19169-31816
Sequence    

Annotation

kegg
ID rcu:RCOM_0436260
description hypothetical protein
nr
ID XP_012089968.1
description PREDICTED: transcriptional activator DEMETER isoform X1 [Jatropha curcas]
swissprot
ID Q8LK56
description Transcriptional activator DEMETER OS=Arabidopsis thaliana GN=DME PE=1 SV=2
trembl
ID A0A067LCQ2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_01528 PE=4 SV=1
Gene Ontology
ID GO:0003824
description transcriptional activator demeter-like isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_30564: 19377-19885 , PASA_asmbl_30565: 20667-20866 , PASA_asmbl_30566: 21299-24303 , PASA_asmbl_30567: 24339-31811 , PASA_asmbl_30568: 24339-31811 , PASA_asmbl_30569: 27457-27718
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002915_010 0.0 - - PREDICTED: transcriptional activator DEMETER isoform X1 [Jatropha curcas]
2 Hb_012779_080 0.0652644832 - - PREDICTED: carbon catabolite repressor protein 4 homolog 3 isoform X3 [Jatropha curcas]
3 Hb_003883_010 0.0697528606 - - PREDICTED: cold-inducible RNA-binding protein [Jatropha curcas]
4 Hb_000320_190 0.0768823518 - - PREDICTED: aminomethyltransferase, mitochondrial [Jatropha curcas]
5 Hb_002107_050 0.0821734357 - - PREDICTED: prostaglandin E synthase 2 [Jatropha curcas]
6 Hb_000094_100 0.0842169159 - - PREDICTED: probable methyltransferase PMT28 [Jatropha curcas]
7 Hb_000680_010 0.0879524078 - - PREDICTED: putative hydrolase C777.06c [Populus euphratica]
8 Hb_001430_020 0.0888089028 - - Actin-like ATPase superfamily protein isoform 1 [Theobroma cacao]
9 Hb_005665_090 0.0900963981 - - PREDICTED: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase isoform X2 [Jatropha curcas]
10 Hb_002218_020 0.0906550575 - - PREDICTED: AT-hook motif nuclear-localized protein 14 [Jatropha curcas]
11 Hb_138585_030 0.0913082316 - - PREDICTED: probable serine/threonine-protein kinase At1g54610 [Jatropha curcas]
12 Hb_002150_140 0.091863333 - - PREDICTED: girdin-like [Jatropha curcas]
13 Hb_010344_020 0.0935439921 - - PREDICTED: pentatricopeptide repeat-containing protein At1g79490, mitochondrial [Jatropha curcas]
14 Hb_000016_310 0.0948142986 - - protein binding protein, putative [Ricinus communis]
15 Hb_010620_050 0.0963462105 - - PREDICTED: uncharacterized protein LOC105646119 [Jatropha curcas]
16 Hb_160271_010 0.0965356488 - - PREDICTED: FAD synthase-like isoform X2 [Jatropha curcas]
17 Hb_000318_220 0.0975171997 - - conserved hypothetical protein [Ricinus communis]
18 Hb_009288_040 0.1015558296 - - PREDICTED: uncharacterized protein LOC105648677 [Jatropha curcas]
19 Hb_102948_010 0.10193533 transcription factor TF Family: ARID PREDICTED: AT-rich interactive domain-containing protein 5 isoform X2 [Jatropha curcas]
20 Hb_001396_020 0.1027100129 - - glucose-6-phosphate dehydrogenase [Hevea brasiliensis]

Gene co-expression network

sample Hb_002915_010 Hb_002915_010 Hb_012779_080 Hb_012779_080 Hb_002915_010--Hb_012779_080 Hb_003883_010 Hb_003883_010 Hb_002915_010--Hb_003883_010 Hb_000320_190 Hb_000320_190 Hb_002915_010--Hb_000320_190 Hb_002107_050 Hb_002107_050 Hb_002915_010--Hb_002107_050 Hb_000094_100 Hb_000094_100 Hb_002915_010--Hb_000094_100 Hb_000680_010 Hb_000680_010 Hb_002915_010--Hb_000680_010 Hb_005665_090 Hb_005665_090 Hb_012779_080--Hb_005665_090 Hb_012779_080--Hb_000320_190 Hb_001623_490 Hb_001623_490 Hb_012779_080--Hb_001623_490 Hb_010620_050 Hb_010620_050 Hb_012779_080--Hb_010620_050 Hb_009288_040 Hb_009288_040 Hb_012779_080--Hb_009288_040 Hb_003883_010--Hb_002107_050 Hb_003883_010--Hb_000680_010 Hb_005235_070 Hb_005235_070 Hb_003883_010--Hb_005235_070 Hb_002218_020 Hb_002218_020 Hb_003883_010--Hb_002218_020 Hb_000318_220 Hb_000318_220 Hb_003883_010--Hb_000318_220 Hb_160271_010 Hb_160271_010 Hb_000320_190--Hb_160271_010 Hb_001396_020 Hb_001396_020 Hb_000320_190--Hb_001396_020 Hb_000645_180 Hb_000645_180 Hb_000320_190--Hb_000645_180 Hb_000320_190--Hb_005665_090 Hb_002107_050--Hb_010620_050 Hb_003071_030 Hb_003071_030 Hb_002107_050--Hb_003071_030 Hb_002107_050--Hb_160271_010 Hb_002107_050--Hb_005235_070 Hb_002107_050--Hb_012779_080 Hb_001789_160 Hb_001789_160 Hb_000094_100--Hb_001789_160 Hb_000094_100--Hb_012779_080 Hb_000094_100--Hb_005665_090 Hb_000094_100--Hb_010620_050 Hb_138585_030 Hb_138585_030 Hb_000094_100--Hb_138585_030 Hb_000680_010--Hb_160271_010 Hb_000291_180 Hb_000291_180 Hb_000680_010--Hb_000291_180 Hb_000680_010--Hb_002107_050 Hb_000680_010--Hb_000320_190
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.90739 4.01104 12.1143 5.40987 2.37291 2.04144
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.1342 2.66861 2.84699 2.76032 10.7059

CAGE analysis