Hb_010620_050

Information

Type -
Description -
Location Contig10620: 38884-44055
Sequence    

Annotation

kegg
ID rcu:RCOM_1573300
description phosphatidylcholine transfer protein, putative
nr
ID XP_012087290.1
description PREDICTED: uncharacterized protein LOC105646119 [Jatropha curcas]
swissprot
ID Q9UKL6
description Phosphatidylcholine transfer protein OS=Homo sapiens GN=PCTP PE=1 SV=1
trembl
ID A0A067JZQ0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_22564 PE=4 SV=1
Gene Ontology
ID GO:0008289
description phosphatidylcholine transfer

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_02007: 38852-44005
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_010620_050 0.0 - - PREDICTED: uncharacterized protein LOC105646119 [Jatropha curcas]
2 Hb_002107_050 0.0624568192 - - PREDICTED: prostaglandin E synthase 2 [Jatropha curcas]
3 Hb_012779_080 0.0677628112 - - PREDICTED: carbon catabolite repressor protein 4 homolog 3 isoform X3 [Jatropha curcas]
4 Hb_003071_030 0.0706020186 - - PREDICTED: 20 kDa chaperonin, chloroplastic [Jatropha curcas]
5 Hb_160271_010 0.0800967422 - - PREDICTED: FAD synthase-like isoform X2 [Jatropha curcas]
6 Hb_138585_030 0.0802519517 - - PREDICTED: probable serine/threonine-protein kinase At1g54610 [Jatropha curcas]
7 Hb_009288_040 0.0813169638 - - PREDICTED: uncharacterized protein LOC105648677 [Jatropha curcas]
8 Hb_005665_090 0.0841803386 - - PREDICTED: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase isoform X2 [Jatropha curcas]
9 Hb_001021_210 0.0862529907 transcription factor TF Family: mTERF conserved hypothetical protein [Ricinus communis]
10 Hb_000320_190 0.0870704377 - - PREDICTED: aminomethyltransferase, mitochondrial [Jatropha curcas]
11 Hb_003994_080 0.0876897629 - - PREDICTED: uncharacterized protein LOC105634384 [Jatropha curcas]
12 Hb_007594_080 0.088430134 - - PREDICTED: polygalacturonate 4-alpha-galacturonosyltransferase [Jatropha curcas]
13 Hb_003687_080 0.0884336917 - - PREDICTED: casein kinase I-like [Jatropha curcas]
14 Hb_000094_100 0.0886983234 - - PREDICTED: probable methyltransferase PMT28 [Jatropha curcas]
15 Hb_022693_130 0.0920142877 - - BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative [Ricinus communis]
16 Hb_004705_160 0.0924531773 - - PREDICTED: protein MEI2-like 4 [Jatropha curcas]
17 Hb_000107_250 0.0925684085 - - voltage-gated clc-type chloride channel, putative [Ricinus communis]
18 Hb_000562_070 0.093315604 - - PREDICTED: uncharacterized protein LOC105635371 isoform X1 [Jatropha curcas]
19 Hb_003883_010 0.0935668243 - - PREDICTED: cold-inducible RNA-binding protein [Jatropha curcas]
20 Hb_000327_330 0.0943868596 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_010620_050 Hb_010620_050 Hb_002107_050 Hb_002107_050 Hb_010620_050--Hb_002107_050 Hb_012779_080 Hb_012779_080 Hb_010620_050--Hb_012779_080 Hb_003071_030 Hb_003071_030 Hb_010620_050--Hb_003071_030 Hb_160271_010 Hb_160271_010 Hb_010620_050--Hb_160271_010 Hb_138585_030 Hb_138585_030 Hb_010620_050--Hb_138585_030 Hb_009288_040 Hb_009288_040 Hb_010620_050--Hb_009288_040 Hb_003883_010 Hb_003883_010 Hb_002107_050--Hb_003883_010 Hb_002107_050--Hb_003071_030 Hb_002107_050--Hb_160271_010 Hb_005235_070 Hb_005235_070 Hb_002107_050--Hb_005235_070 Hb_002107_050--Hb_012779_080 Hb_005665_090 Hb_005665_090 Hb_012779_080--Hb_005665_090 Hb_000320_190 Hb_000320_190 Hb_012779_080--Hb_000320_190 Hb_001623_490 Hb_001623_490 Hb_012779_080--Hb_001623_490 Hb_002915_010 Hb_002915_010 Hb_012779_080--Hb_002915_010 Hb_012779_080--Hb_009288_040 Hb_001789_160 Hb_001789_160 Hb_003071_030--Hb_001789_160 Hb_000302_190 Hb_000302_190 Hb_003071_030--Hb_000302_190 Hb_000327_330 Hb_000327_330 Hb_003071_030--Hb_000327_330 Hb_003071_030--Hb_012779_080 Hb_022693_130 Hb_022693_130 Hb_160271_010--Hb_022693_130 Hb_000291_180 Hb_000291_180 Hb_160271_010--Hb_000291_180 Hb_160271_010--Hb_000320_190 Hb_156850_100 Hb_156850_100 Hb_160271_010--Hb_156850_100 Hb_000108_020 Hb_000108_020 Hb_160271_010--Hb_000108_020 Hb_004705_160 Hb_004705_160 Hb_138585_030--Hb_004705_160 Hb_010344_020 Hb_010344_020 Hb_138585_030--Hb_010344_020 Hb_000116_250 Hb_000116_250 Hb_138585_030--Hb_000116_250 Hb_000579_040 Hb_000579_040 Hb_138585_030--Hb_000579_040 Hb_068804_090 Hb_068804_090 Hb_138585_030--Hb_068804_090 Hb_003752_090 Hb_003752_090 Hb_009288_040--Hb_003752_090 Hb_009288_040--Hb_005665_090 Hb_000094_100 Hb_000094_100 Hb_009288_040--Hb_000094_100 Hb_000465_440 Hb_000465_440 Hb_009288_040--Hb_000465_440
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.965 15.2318 36.4523 24.8102 10.1722 8.03393
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.34034 7.72824 6.47801 8.74474 35.0411

CAGE analysis