Hb_156850_100

Information

Type -
Description -
Location Contig156850: 72783-76286
Sequence    

Annotation

kegg
ID cic:CICLE_v10001788mg
description hypothetical protein
nr
ID XP_006435338.1
description hypothetical protein CICLE_v10001788mg [Citrus clementina]
swissprot
ID -
description -
trembl
ID A0A067GZB7
description Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g019961mg PE=4 SV=1
Gene Ontology
ID GO:0009570
description hypothetical protein CICLE_v10001788mg

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_13657: 73002-76239 , PASA_asmbl_13658: 72839-76213
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_156850_100 0.0 - - hypothetical protein CICLE_v10001788mg [Citrus clementina]
2 Hb_160271_010 0.0717208487 - - PREDICTED: FAD synthase-like isoform X2 [Jatropha curcas]
3 Hb_048093_010 0.0742033305 - - PREDICTED: calcium uniporter protein 6, mitochondrial-like [Jatropha curcas]
4 Hb_174865_040 0.0797215712 - - PREDICTED: crt homolog 1 isoform X2 [Jatropha curcas]
5 Hb_002631_240 0.0813007638 - - JHL17M24.3 [Jatropha curcas]
6 Hb_012573_050 0.0827425412 - - choline/ethanolamine kinase family protein [Populus trichocarpa]
7 Hb_001882_010 0.0854169947 - - -
8 Hb_011671_260 0.0868769751 - - PREDICTED: putative lipase ROG1 isoform X1 [Jatropha curcas]
9 Hb_000941_100 0.0882667391 - - thioredoxin-like 5 mRNA family protein [Populus trichocarpa]
10 Hb_001022_030 0.08898019 - - PREDICTED: sorting nexin 1 [Jatropha curcas]
11 Hb_006907_060 0.0893501695 - - Alternative oxidase 4, chloroplast precursor, putative [Ricinus communis]
12 Hb_000291_180 0.0898522221 - - PREDICTED: meiotically up-regulated gene 185 protein [Jatropha curcas]
13 Hb_042083_040 0.0903397817 - - conserved hypothetical protein [Ricinus communis]
14 Hb_000926_080 0.0928105477 - - PREDICTED: paraspeckle component 1 [Jatropha curcas]
15 Hb_003266_030 0.0938941212 - - hypothetical protein POPTR_0002s05550g [Populus trichocarpa]
16 Hb_000086_080 0.0939645919 - - conserved hypothetical protein [Ricinus communis]
17 Hb_003053_110 0.094574293 - - PREDICTED: protease Do-like 1, chloroplastic [Jatropha curcas]
18 Hb_022693_130 0.0959627725 - - BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative [Ricinus communis]
19 Hb_007741_110 0.0962488418 - - -
20 Hb_012305_100 0.0962540894 rubber biosynthesis Gene Name: Dihydrolipoamide dehydrogenase PREDICTED: dihydrolipoyl dehydrogenase 2, chloroplastic-like [Jatropha curcas]

Gene co-expression network

sample Hb_156850_100 Hb_156850_100 Hb_160271_010 Hb_160271_010 Hb_156850_100--Hb_160271_010 Hb_048093_010 Hb_048093_010 Hb_156850_100--Hb_048093_010 Hb_174865_040 Hb_174865_040 Hb_156850_100--Hb_174865_040 Hb_002631_240 Hb_002631_240 Hb_156850_100--Hb_002631_240 Hb_012573_050 Hb_012573_050 Hb_156850_100--Hb_012573_050 Hb_001882_010 Hb_001882_010 Hb_156850_100--Hb_001882_010 Hb_022693_130 Hb_022693_130 Hb_160271_010--Hb_022693_130 Hb_000291_180 Hb_000291_180 Hb_160271_010--Hb_000291_180 Hb_000320_190 Hb_000320_190 Hb_160271_010--Hb_000320_190 Hb_002107_050 Hb_002107_050 Hb_160271_010--Hb_002107_050 Hb_000108_020 Hb_000108_020 Hb_160271_010--Hb_000108_020 Hb_000941_100 Hb_000941_100 Hb_048093_010--Hb_000941_100 Hb_003053_110 Hb_003053_110 Hb_048093_010--Hb_003053_110 Hb_012150_030 Hb_012150_030 Hb_048093_010--Hb_012150_030 Hb_048093_010--Hb_000291_180 Hb_134849_010 Hb_134849_010 Hb_048093_010--Hb_134849_010 Hb_042083_040 Hb_042083_040 Hb_174865_040--Hb_042083_040 Hb_174865_040--Hb_160271_010 Hb_174865_040--Hb_022693_130 Hb_073973_120 Hb_073973_120 Hb_174865_040--Hb_073973_120 Hb_000388_150 Hb_000388_150 Hb_174865_040--Hb_000388_150 Hb_006907_060 Hb_006907_060 Hb_002631_240--Hb_006907_060 Hb_011671_260 Hb_011671_260 Hb_002631_240--Hb_011671_260 Hb_073973_090 Hb_073973_090 Hb_002631_240--Hb_073973_090 Hb_001703_040 Hb_001703_040 Hb_002631_240--Hb_001703_040 Hb_000537_100 Hb_000537_100 Hb_002631_240--Hb_000537_100 Hb_005946_040 Hb_005946_040 Hb_002631_240--Hb_005946_040 Hb_000244_180 Hb_000244_180 Hb_012573_050--Hb_000244_180 Hb_000721_030 Hb_000721_030 Hb_012573_050--Hb_000721_030 Hb_000116_130 Hb_000116_130 Hb_012573_050--Hb_000116_130 Hb_000167_110 Hb_000167_110 Hb_012573_050--Hb_000167_110 Hb_007975_060 Hb_007975_060 Hb_012573_050--Hb_007975_060 Hb_000163_260 Hb_000163_260 Hb_001882_010--Hb_000163_260 Hb_001882_010--Hb_000291_180 Hb_000029_400 Hb_000029_400 Hb_001882_010--Hb_000029_400 Hb_000007_090 Hb_000007_090 Hb_001882_010--Hb_000007_090 Hb_001882_010--Hb_160271_010 Hb_001882_010--Hb_073973_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.35456 3.05864 13.8837 10.9466 3.43023 4.85731
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.30756 5.10364 5.02162 3.72924 13.8112

CAGE analysis