Hb_000244_180

Information

Type -
Description -
Location Contig244: 206835-211100
Sequence    

Annotation

kegg
ID rcu:RCOM_1461210
description hypothetical protein
nr
ID XP_002517253.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID F4I037
description Protein trichome berefringence-like 7 OS=Arabidopsis thaliana GN=TBL7 PE=3 SV=1
trembl
ID B9RU34
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1461210 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_25468: 206941-208842
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000244_180 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_012573_050 0.0825292879 - - choline/ethanolamine kinase family protein [Populus trichocarpa]
3 Hb_004754_050 0.0843324372 - - PREDICTED: uncharacterized protein LOC104433925 [Eucalyptus grandis]
4 Hb_171215_010 0.0860146972 - - vesicle-associated membrane protein, putative [Ricinus communis]
5 Hb_007975_060 0.0884393892 - - PREDICTED: uncharacterized GPI-anchored protein At1g61900 isoform X2 [Jatropha curcas]
6 Hb_000721_030 0.0898838918 rubber biosynthesis Gene Name: Mevalonate diphosphate decarboxylase mevalonate diphosphate decarboxylase [Hevea brasiliensis]
7 Hb_001876_040 0.0899463628 - - PREDICTED: mucin-5B [Jatropha curcas]
8 Hb_000205_140 0.0903438467 - - PREDICTED: uncharacterized protein LOC105647751 [Jatropha curcas]
9 Hb_001504_030 0.0911964308 - - PREDICTED: probable CCR4-associated factor 1 homolog 6 [Jatropha curcas]
10 Hb_000212_120 0.0925134891 - - hypothetical protein JCGZ_18070 [Jatropha curcas]
11 Hb_133702_010 0.0962540906 - - PREDICTED: reticulon-4-interacting protein 1, mitochondrial isoform X1 [Jatropha curcas]
12 Hb_001157_230 0.0967560743 - - Protein AFR, putative [Ricinus communis]
13 Hb_000061_180 0.0991614321 - - exonuclease, putative [Ricinus communis]
14 Hb_000107_430 0.1003187433 - - PREDICTED: brefeldin A-inhibited guanine nucleotide-exchange protein 1 [Jatropha curcas]
15 Hb_001512_040 0.1004731829 - - PREDICTED: probable methyltransferase PMT9 [Jatropha curcas]
16 Hb_001633_200 0.1006667478 - - hypothetical protein B456_005G137400 [Gossypium raimondii]
17 Hb_032202_220 0.1011467916 - - ring finger protein, putative [Ricinus communis]
18 Hb_013405_020 0.1011513207 - - -
19 Hb_000136_140 0.1015743845 - - PREDICTED: uncharacterized protein LOC105648960 [Jatropha curcas]
20 Hb_000108_050 0.101922312 - - PREDICTED: mitochondrial dicarboxylate/tricarboxylate transporter DTC [Jatropha curcas]

Gene co-expression network

sample Hb_000244_180 Hb_000244_180 Hb_012573_050 Hb_012573_050 Hb_000244_180--Hb_012573_050 Hb_004754_050 Hb_004754_050 Hb_000244_180--Hb_004754_050 Hb_171215_010 Hb_171215_010 Hb_000244_180--Hb_171215_010 Hb_007975_060 Hb_007975_060 Hb_000244_180--Hb_007975_060 Hb_000721_030 Hb_000721_030 Hb_000244_180--Hb_000721_030 Hb_001876_040 Hb_001876_040 Hb_000244_180--Hb_001876_040 Hb_156850_100 Hb_156850_100 Hb_012573_050--Hb_156850_100 Hb_012573_050--Hb_000721_030 Hb_000116_130 Hb_000116_130 Hb_012573_050--Hb_000116_130 Hb_000167_110 Hb_000167_110 Hb_012573_050--Hb_000167_110 Hb_012573_050--Hb_007975_060 Hb_004754_050--Hb_007975_060 Hb_002157_120 Hb_002157_120 Hb_004754_050--Hb_002157_120 Hb_019181_040 Hb_019181_040 Hb_004754_050--Hb_019181_040 Hb_133702_010 Hb_133702_010 Hb_004754_050--Hb_133702_010 Hb_001087_030 Hb_001087_030 Hb_004754_050--Hb_001087_030 Hb_000058_130 Hb_000058_130 Hb_004754_050--Hb_000058_130 Hb_000107_430 Hb_000107_430 Hb_171215_010--Hb_000107_430 Hb_001357_200 Hb_001357_200 Hb_171215_010--Hb_001357_200 Hb_022092_030 Hb_022092_030 Hb_171215_010--Hb_022092_030 Hb_001226_140 Hb_001226_140 Hb_171215_010--Hb_001226_140 Hb_000025_350 Hb_000025_350 Hb_171215_010--Hb_000025_350 Hb_000061_180 Hb_000061_180 Hb_007975_060--Hb_000061_180 Hb_007975_060--Hb_002157_120 Hb_013405_020 Hb_013405_020 Hb_007975_060--Hb_013405_020 Hb_007975_060--Hb_133702_010 Hb_000023_260 Hb_000023_260 Hb_007975_060--Hb_000023_260 Hb_000721_030--Hb_133702_010 Hb_004452_120 Hb_004452_120 Hb_000721_030--Hb_004452_120 Hb_005800_030 Hb_005800_030 Hb_000721_030--Hb_005800_030 Hb_001946_390 Hb_001946_390 Hb_000721_030--Hb_001946_390 Hb_001504_030 Hb_001504_030 Hb_000721_030--Hb_001504_030 Hb_001157_230 Hb_001157_230 Hb_001876_040--Hb_001157_230 Hb_022250_010 Hb_022250_010 Hb_001876_040--Hb_022250_010 Hb_000212_120 Hb_000212_120 Hb_001876_040--Hb_000212_120 Hb_032202_220 Hb_032202_220 Hb_001876_040--Hb_032202_220 Hb_024184_010 Hb_024184_010 Hb_001876_040--Hb_024184_010 Hb_002027_080 Hb_002027_080 Hb_001876_040--Hb_002027_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.0475 1.37662 4.04278 5.25676 1.98222 2.35285
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.99978 2.41701 3.22074 2.00974 5.50023

CAGE analysis