Hb_012573_050

Information

Type -
Description -
Location Contig12573: 41716-49491
Sequence    

Annotation

kegg
ID pop:POPTR_0006s12230g
description choline/ethanolamine kinase family protein
nr
ID XP_006381367.1
description choline/ethanolamine kinase family protein [Populus trichocarpa]
swissprot
ID O81024
description Probable ethanolamine kinase OS=Arabidopsis thaliana GN=EMB1187 PE=2 SV=1
trembl
ID B9MTI9
description Choline/ethanolamine kinase family protein OS=Populus trichocarpa GN=POPTR_0006s12230g PE=4 SV=1
Gene Ontology
ID GO:0004305
description probable ethanolamine kinase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_07869: 41981-49487
cDNA
(Sanger)
(ID:Location)		 051_G21.ab1: 42797-49487

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_012573_050 0.0 - - choline/ethanolamine kinase family protein [Populus trichocarpa]
2 Hb_000244_180 0.0825292879 - - conserved hypothetical protein [Ricinus communis]
3 Hb_156850_100 0.0827425412 - - hypothetical protein CICLE_v10001788mg [Citrus clementina]
4 Hb_000721_030 0.0860930264 rubber biosynthesis Gene Name: Mevalonate diphosphate decarboxylase mevalonate diphosphate decarboxylase [Hevea brasiliensis]
5 Hb_000116_130 0.0877497272 - - PREDICTED: aspartic proteinase Asp1 [Jatropha curcas]
6 Hb_000167_110 0.0919430557 - - glycerol-3-phosphate dehydrogenase, putative [Ricinus communis]
7 Hb_007975_060 0.0936528261 - - PREDICTED: uncharacterized GPI-anchored protein At1g61900 isoform X2 [Jatropha curcas]
8 Hb_000107_430 0.09403163 - - PREDICTED: brefeldin A-inhibited guanine nucleotide-exchange protein 1 [Jatropha curcas]
9 Hb_074197_040 0.097465101 - - PREDICTED: SNARE-interacting protein KEULE [Jatropha curcas]
10 Hb_011671_260 0.0975614642 - - PREDICTED: putative lipase ROG1 isoform X1 [Jatropha curcas]
11 Hb_001663_040 0.0977539555 - - hypothetical protein B456_007G162000 [Gossypium raimondii]
12 Hb_003266_030 0.0982382551 - - hypothetical protein POPTR_0002s05550g [Populus trichocarpa]
13 Hb_000061_180 0.0994198409 - - exonuclease, putative [Ricinus communis]
14 Hb_171215_010 0.0999410744 - - vesicle-associated membrane protein, putative [Ricinus communis]
15 Hb_004631_090 0.1008782823 - - PREDICTED: probable glucan 1,3-beta-glucosidase A [Jatropha curcas]
16 Hb_001195_400 0.1016317224 - - glucose-6-phosphate isomerase, putative [Ricinus communis]
17 Hb_048093_010 0.1018602518 - - PREDICTED: calcium uniporter protein 6, mitochondrial-like [Jatropha curcas]
18 Hb_001504_030 0.1022740268 - - PREDICTED: probable CCR4-associated factor 1 homolog 6 [Jatropha curcas]
19 Hb_000368_090 0.1027294676 - - TPA: hypothetical protein ZEAMMB73_442906 [Zea mays]
20 Hb_000136_140 0.1029353995 - - PREDICTED: uncharacterized protein LOC105648960 [Jatropha curcas]

Gene co-expression network

sample Hb_012573_050 Hb_012573_050 Hb_000244_180 Hb_000244_180 Hb_012573_050--Hb_000244_180 Hb_156850_100 Hb_156850_100 Hb_012573_050--Hb_156850_100 Hb_000721_030 Hb_000721_030 Hb_012573_050--Hb_000721_030 Hb_000116_130 Hb_000116_130 Hb_012573_050--Hb_000116_130 Hb_000167_110 Hb_000167_110 Hb_012573_050--Hb_000167_110 Hb_007975_060 Hb_007975_060 Hb_012573_050--Hb_007975_060 Hb_004754_050 Hb_004754_050 Hb_000244_180--Hb_004754_050 Hb_171215_010 Hb_171215_010 Hb_000244_180--Hb_171215_010 Hb_000244_180--Hb_007975_060 Hb_000244_180--Hb_000721_030 Hb_001876_040 Hb_001876_040 Hb_000244_180--Hb_001876_040 Hb_160271_010 Hb_160271_010 Hb_156850_100--Hb_160271_010 Hb_048093_010 Hb_048093_010 Hb_156850_100--Hb_048093_010 Hb_174865_040 Hb_174865_040 Hb_156850_100--Hb_174865_040 Hb_002631_240 Hb_002631_240 Hb_156850_100--Hb_002631_240 Hb_001882_010 Hb_001882_010 Hb_156850_100--Hb_001882_010 Hb_133702_010 Hb_133702_010 Hb_000721_030--Hb_133702_010 Hb_004452_120 Hb_004452_120 Hb_000721_030--Hb_004452_120 Hb_005800_030 Hb_005800_030 Hb_000721_030--Hb_005800_030 Hb_001946_390 Hb_001946_390 Hb_000721_030--Hb_001946_390 Hb_001504_030 Hb_001504_030 Hb_000721_030--Hb_001504_030 Hb_011606_020 Hb_011606_020 Hb_000116_130--Hb_011606_020 Hb_170138_010 Hb_170138_010 Hb_000116_130--Hb_170138_010 Hb_000077_150 Hb_000077_150 Hb_000116_130--Hb_000077_150 Hb_000107_430 Hb_000107_430 Hb_000116_130--Hb_000107_430 Hb_001663_040 Hb_001663_040 Hb_000116_130--Hb_001663_040 Hb_011671_260 Hb_011671_260 Hb_000167_110--Hb_011671_260 Hb_008705_020 Hb_008705_020 Hb_000167_110--Hb_008705_020 Hb_000167_110--Hb_000107_430 Hb_003053_110 Hb_003053_110 Hb_000167_110--Hb_003053_110 Hb_003411_090 Hb_003411_090 Hb_000167_110--Hb_003411_090 Hb_003266_030 Hb_003266_030 Hb_000167_110--Hb_003266_030 Hb_007975_060--Hb_004754_050 Hb_000061_180 Hb_000061_180 Hb_007975_060--Hb_000061_180 Hb_002157_120 Hb_002157_120 Hb_007975_060--Hb_002157_120 Hb_013405_020 Hb_013405_020 Hb_007975_060--Hb_013405_020 Hb_007975_060--Hb_133702_010 Hb_000023_260 Hb_000023_260 Hb_007975_060--Hb_000023_260
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.62082 1.30347 4.88624 5.29034 1.82084 2.63647
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.41157 2.4016 3.65756 2.09882 6.18492

CAGE analysis