Hb_001946_390

Information

Type -
Description -
Location Contig1946: 313483-326415
Sequence    

Annotation

kegg
ID rcu:RCOM_0221090
description NADH-cytochrome B5 reductase, putative (EC:1.6.2.2)
nr
ID XP_012078748.1
description PREDICTED: NADH-cytochrome b5 reductase-like protein [Jatropha curcas]
swissprot
ID P83291
description NADH-cytochrome b5 reductase-like protein OS=Arabidopsis thaliana GN=CBR2 PE=1 SV=2
trembl
ID A0A067K810
description NADH-cytochrome b5 reductase OS=Jatropha curcas GN=JCGZ_13301 PE=3 SV=1
Gene Ontology
ID GO:0005758
description nadh-cytochrome b5 reductase-like protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_19436: 318752-321621 , PASA_asmbl_19437: 313411-326370
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001946_390 0.0 - - PREDICTED: NADH-cytochrome b5 reductase-like protein [Jatropha curcas]
2 Hb_002392_010 0.0697205183 - - PREDICTED: apurinic endonuclease-redox protein isoform X4 [Jatropha curcas]
3 Hb_012733_040 0.0746944239 - - ATP-dependent clp protease ATP-binding subunit clpx, putative [Ricinus communis]
4 Hb_004452_120 0.0781538196 - - PREDICTED: uncharacterized protein LOC105639574 [Jatropha curcas]
5 Hb_066842_010 0.0820511329 - - PREDICTED: probable 6-phosphogluconolactonase 4, chloroplastic [Jatropha curcas]
6 Hb_000174_260 0.0847922391 - - PREDICTED: 2-alkenal reductase (NADP(+)-dependent) [Jatropha curcas]
7 Hb_000721_030 0.0854886993 rubber biosynthesis Gene Name: Mevalonate diphosphate decarboxylase mevalonate diphosphate decarboxylase [Hevea brasiliensis]
8 Hb_000185_220 0.0864717936 - - PREDICTED: uncharacterized protein LOC105631115 [Jatropha curcas]
9 Hb_001195_400 0.0871809565 - - glucose-6-phosphate isomerase, putative [Ricinus communis]
10 Hb_012393_030 0.0873004268 - - NADP-dependent isocitrate dehydrogenase family protein [Populus trichocarpa]
11 Hb_000364_050 0.0885352809 - - PREDICTED: CBS domain-containing protein CBSX1, chloroplastic [Jatropha curcas]
12 Hb_000080_130 0.0921016993 - - PREDICTED: TBC1 domain family member 22B [Jatropha curcas]
13 Hb_003605_020 0.0928052429 - - exocyst complex component sec6, putative [Ricinus communis]
14 Hb_000317_260 0.0930977993 - - unknown [Populus trichocarpa]
15 Hb_004545_110 0.0932987382 - - DHHC-type zinc finger family protein isoform 1 [Theobroma cacao]
16 Hb_170138_010 0.0933869796 - - conserved hypothetical protein [Ricinus communis]
17 Hb_003266_030 0.0934779372 - - hypothetical protein POPTR_0002s05550g [Populus trichocarpa]
18 Hb_133702_010 0.0938218324 - - PREDICTED: reticulon-4-interacting protein 1, mitochondrial isoform X1 [Jatropha curcas]
19 Hb_000120_370 0.0940831937 - - type 2 diacylglycerol acyltransferase [Ricinus communis]
20 Hb_001662_130 0.0952731503 - - PREDICTED: bifunctional nuclease 2 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_001946_390 Hb_001946_390 Hb_002392_010 Hb_002392_010 Hb_001946_390--Hb_002392_010 Hb_012733_040 Hb_012733_040 Hb_001946_390--Hb_012733_040 Hb_004452_120 Hb_004452_120 Hb_001946_390--Hb_004452_120 Hb_066842_010 Hb_066842_010 Hb_001946_390--Hb_066842_010 Hb_000174_260 Hb_000174_260 Hb_001946_390--Hb_000174_260 Hb_000721_030 Hb_000721_030 Hb_001946_390--Hb_000721_030 Hb_032920_070 Hb_032920_070 Hb_002392_010--Hb_032920_070 Hb_002110_100 Hb_002110_100 Hb_002392_010--Hb_002110_100 Hb_000185_220 Hb_000185_220 Hb_002392_010--Hb_000185_220 Hb_002392_010--Hb_066842_010 Hb_005601_040 Hb_005601_040 Hb_002392_010--Hb_005601_040 Hb_001242_120 Hb_001242_120 Hb_012733_040--Hb_001242_120 Hb_001195_400 Hb_001195_400 Hb_012733_040--Hb_001195_400 Hb_002301_100 Hb_002301_100 Hb_012733_040--Hb_002301_100 Hb_000364_050 Hb_000364_050 Hb_012733_040--Hb_000364_050 Hb_012733_040--Hb_004452_120 Hb_003159_050 Hb_003159_050 Hb_012733_040--Hb_003159_050 Hb_012150_030 Hb_012150_030 Hb_004452_120--Hb_012150_030 Hb_010863_050 Hb_010863_050 Hb_004452_120--Hb_010863_050 Hb_133702_010 Hb_133702_010 Hb_004452_120--Hb_133702_010 Hb_004452_120--Hb_000364_050 Hb_000061_180 Hb_000061_180 Hb_004452_120--Hb_000061_180 Hb_035273_020 Hb_035273_020 Hb_004452_120--Hb_035273_020 Hb_000590_120 Hb_000590_120 Hb_066842_010--Hb_000590_120 Hb_001269_190 Hb_001269_190 Hb_066842_010--Hb_001269_190 Hb_066842_010--Hb_000185_220 Hb_000136_100 Hb_000136_100 Hb_066842_010--Hb_000136_100 Hb_005276_040 Hb_005276_040 Hb_000174_260--Hb_005276_040 Hb_001221_030 Hb_001221_030 Hb_000174_260--Hb_001221_030 Hb_003605_020 Hb_003605_020 Hb_000174_260--Hb_003605_020 Hb_000330_090 Hb_000330_090 Hb_000174_260--Hb_000330_090 Hb_000684_030 Hb_000684_030 Hb_000174_260--Hb_000684_030 Hb_001269_130 Hb_001269_130 Hb_000174_260--Hb_001269_130 Hb_000721_030--Hb_133702_010 Hb_000721_030--Hb_004452_120 Hb_005800_030 Hb_005800_030 Hb_000721_030--Hb_005800_030 Hb_012573_050 Hb_012573_050 Hb_000721_030--Hb_012573_050 Hb_001504_030 Hb_001504_030 Hb_000721_030--Hb_001504_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.92587 4.27968 15.033 17.5754 5.23876 6.88238
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
13.9372 10.265 8.7185 13.3967 17.3865

CAGE analysis