Hb_000590_120

Information

Type -
Description -
Location Contig590: 158111-162419
Sequence    

Annotation

kegg
ID rcu:RCOM_1103250
description dehydroascorbate reductase, putative
nr
ID XP_002523030.1
description dehydroascorbate reductase, putative [Ricinus communis]
swissprot
ID Q9FRL8
description Glutathione S-transferase DHAR2 OS=Arabidopsis thaliana GN=DHAR2 PE=1 SV=1
trembl
ID B9SAL1
description Dehydroascorbate reductase, putative OS=Ricinus communis GN=RCOM_1103250 PE=4 SV=1
Gene Ontology
ID GO:0004364
description dehydroascorbate reductase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_50204: 158115-162400 , PASA_asmbl_50205: 161258-162314
cDNA
(Sanger)
(ID:Location)		 015_E08.ab1: 160586-162379 , 025_O21.ab1: 158270-162349

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000590_120 0.0 - - dehydroascorbate reductase, putative [Ricinus communis]
2 Hb_001662_130 0.0746561931 - - PREDICTED: bifunctional nuclease 2 isoform X1 [Jatropha curcas]
3 Hb_000240_030 0.0803966979 - - conserved hypothetical protein [Ricinus communis]
4 Hb_066842_010 0.0841988804 - - PREDICTED: probable 6-phosphogluconolactonase 4, chloroplastic [Jatropha curcas]
5 Hb_001269_190 0.096223647 - - PREDICTED: Golgi SNAP receptor complex member 1-1 [Jatropha curcas]
6 Hb_002110_100 0.0965399253 - - PREDICTED: pyridoxine/pyridoxamine 5'-phosphate oxidase 1, chloroplastic [Jatropha curcas]
7 Hb_004951_060 0.0983884221 - - PREDICTED: uncharacterized protein LOC105634399 [Jatropha curcas]
8 Hb_002392_010 0.1040111144 - - PREDICTED: apurinic endonuclease-redox protein isoform X4 [Jatropha curcas]
9 Hb_180343_010 0.1043367147 - - Biotin carboxyl carrier protein of acetyl-CoA carboxylase, putative [Ricinus communis]
10 Hb_010997_090 0.1062612693 transcription factor TF Family: mTERF hypothetical protein PRUPE_ppa019510mg, partial [Prunus persica]
11 Hb_000243_350 0.1069163616 - - PREDICTED: V-type proton ATPase 16 kDa proteolipid subunit [Tarenaya hassleriana]
12 Hb_006683_070 0.107809626 - - PREDICTED: uncharacterized protein LOC105631443 [Jatropha curcas]
13 Hb_000017_260 0.1080439646 - - hypothetical protein POPTR_0003s13070g [Populus trichocarpa]
14 Hb_007441_080 0.1084852173 - - PREDICTED: ELMO domain-containing protein C-like [Jatropha curcas]
15 Hb_001946_390 0.1085827694 - - PREDICTED: NADH-cytochrome b5 reductase-like protein [Jatropha curcas]
16 Hb_000615_050 0.1088651888 - - Potassium transporter 11 family protein [Populus trichocarpa]
17 Hb_185830_060 0.1098467896 - - PREDICTED: ras-related protein RABB1c [Fragaria vesca subsp. vesca]
18 Hb_032920_070 0.1112048879 - - PREDICTED: zinc finger protein-like 1 homolog [Jatropha curcas]
19 Hb_021409_080 0.11248383 - - PREDICTED: ORM1-like protein 1 [Jatropha curcas]
20 Hb_000185_220 0.1146811774 - - PREDICTED: uncharacterized protein LOC105631115 [Jatropha curcas]

Gene co-expression network

sample Hb_000590_120 Hb_000590_120 Hb_001662_130 Hb_001662_130 Hb_000590_120--Hb_001662_130 Hb_000240_030 Hb_000240_030 Hb_000590_120--Hb_000240_030 Hb_066842_010 Hb_066842_010 Hb_000590_120--Hb_066842_010 Hb_001269_190 Hb_001269_190 Hb_000590_120--Hb_001269_190 Hb_002110_100 Hb_002110_100 Hb_000590_120--Hb_002110_100 Hb_004951_060 Hb_004951_060 Hb_000590_120--Hb_004951_060 Hb_001662_130--Hb_004951_060 Hb_000080_130 Hb_000080_130 Hb_001662_130--Hb_000080_130 Hb_015675_040 Hb_015675_040 Hb_001662_130--Hb_015675_040 Hb_001766_050 Hb_001766_050 Hb_001662_130--Hb_001766_050 Hb_005653_070 Hb_005653_070 Hb_001662_130--Hb_005653_070 Hb_000240_030--Hb_066842_010 Hb_006683_070 Hb_006683_070 Hb_000240_030--Hb_006683_070 Hb_011249_020 Hb_011249_020 Hb_000240_030--Hb_011249_020 Hb_002392_010 Hb_002392_010 Hb_000240_030--Hb_002392_010 Hb_000240_030--Hb_002110_100 Hb_066842_010--Hb_002392_010 Hb_001946_390 Hb_001946_390 Hb_066842_010--Hb_001946_390 Hb_066842_010--Hb_001269_190 Hb_000185_220 Hb_000185_220 Hb_066842_010--Hb_000185_220 Hb_000136_100 Hb_000136_100 Hb_066842_010--Hb_000136_100 Hb_185255_010 Hb_185255_010 Hb_001269_190--Hb_185255_010 Hb_002995_050 Hb_002995_050 Hb_001269_190--Hb_002995_050 Hb_001489_110 Hb_001489_110 Hb_001269_190--Hb_001489_110 Hb_000179_270 Hb_000179_270 Hb_001269_190--Hb_000179_270 Hb_001269_190--Hb_006683_070 Hb_000087_070 Hb_000087_070 Hb_001269_190--Hb_000087_070 Hb_032920_070 Hb_032920_070 Hb_002110_100--Hb_032920_070 Hb_003305_040 Hb_003305_040 Hb_002110_100--Hb_003305_040 Hb_002110_100--Hb_002392_010 Hb_004158_020 Hb_004158_020 Hb_002110_100--Hb_004158_020 Hb_002110_100--Hb_005653_070 Hb_005701_120 Hb_005701_120 Hb_002110_100--Hb_005701_120 Hb_062226_060 Hb_062226_060 Hb_004951_060--Hb_062226_060 Hb_000394_180 Hb_000394_180 Hb_004951_060--Hb_000394_180 Hb_007192_030 Hb_007192_030 Hb_004951_060--Hb_007192_030 Hb_000317_260 Hb_000317_260 Hb_004951_060--Hb_000317_260 Hb_006846_150 Hb_006846_150 Hb_004951_060--Hb_006846_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
46.7091 75.7038 131.531 247.457 31.6317 66.6534
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
179.683 116.108 110.395 91.844 191.957

CAGE analysis