Hb_004158_020

Information

Type -
Description -
Location Contig4158: 46155-53134
Sequence    

Annotation

kegg
ID cic:CICLE_v10012725mg
description hypothetical protein
nr
ID ADL59582.1
description Rab1 [Hevea brasiliensis]
swissprot
ID P28186
description Ras-related protein RABE1c OS=Arabidopsis thaliana GN=RABE1C PE=1 SV=1
trembl
ID G0WJW7
description Rab1 OS=Hevea brasiliensis PE=2 SV=1
Gene Ontology
ID GO:0005829
description ras-related protein rabe1c

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_41119: 46458-53122 , PASA_asmbl_41121: 51493-53119
cDNA
(Sanger)
(ID:Location)		 005_F16.ab1: 46466-52912 , 005_L04.ab1: 46466-52916 , 033_J03.ab1: 46462-52862 , 053_G08.ab1: 46464-52856

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004158_020 0.0 - - Rab1 [Hevea brasiliensis]
2 Hb_002110_100 0.0772422891 - - PREDICTED: pyridoxine/pyridoxamine 5'-phosphate oxidase 1, chloroplastic [Jatropha curcas]
3 Hb_000402_130 0.0937973488 - - PREDICTED: AP-1 complex subunit mu-2 [Jatropha curcas]
4 Hb_032920_070 0.1033499999 - - PREDICTED: zinc finger protein-like 1 homolog [Jatropha curcas]
5 Hb_001754_080 0.1055542785 - - PREDICTED: protein RALF-like 33 [Jatropha curcas]
6 Hb_004007_110 0.1059746433 - - PREDICTED: mitochondrial outer membrane protein porin 2-like [Jatropha curcas]
7 Hb_000023_310 0.1075483636 - - PREDICTED: probable folate-biopterin transporter 2 [Populus euphratica]
8 Hb_020390_010 0.1109666244 - - PREDICTED: expansin-A13 [Jatropha curcas]
9 Hb_005701_120 0.1111569652 - - PREDICTED: V-type proton ATPase 16 kDa proteolipid subunit [Cucumis sativus]
10 Hb_002615_030 0.1123715962 - - PREDICTED: E3 ubiquitin-protein ligase RHF1A-like [Populus euphratica]
11 Hb_003207_020 0.1133924913 - - PREDICTED: bifunctional dTDP-4-dehydrorhamnose 3,5-epimerase/dTDP-4-dehydrorhamnose reductase [Jatropha curcas]
12 Hb_000742_020 0.1142572713 - - ARF GTPase activator, putative [Ricinus communis]
13 Hb_048476_060 0.1159582296 - - PREDICTED: CRAL-TRIO domain-containing protein YKL091C-like isoform X2 [Jatropha curcas]
14 Hb_002193_060 0.1161479642 - - PREDICTED: uncharacterized protein C4orf29 homolog [Pyrus x bretschneideri]
15 Hb_003305_040 0.1176533231 - - AP47/50p mRNA family protein [Populus trichocarpa]
16 Hb_012305_130 0.1177569976 - - PREDICTED: GTP-binding protein SAR1A [Jatropha curcas]
17 Hb_027073_010 0.1191817336 - - PREDICTED: protein CHROMOSOME TRANSMISSION FIDELITY 7 [Jatropha curcas]
18 Hb_000062_090 0.1192241221 - - PREDICTED: uncharacterized protein LOC105644743 isoform X2 [Jatropha curcas]
19 Hb_003994_030 0.1197185358 - - PREDICTED: organic cation/carnitine transporter 7 [Jatropha curcas]
20 Hb_007441_080 0.1205916746 - - PREDICTED: ELMO domain-containing protein C-like [Jatropha curcas]

Gene co-expression network

sample Hb_004158_020 Hb_004158_020 Hb_002110_100 Hb_002110_100 Hb_004158_020--Hb_002110_100 Hb_000402_130 Hb_000402_130 Hb_004158_020--Hb_000402_130 Hb_032920_070 Hb_032920_070 Hb_004158_020--Hb_032920_070 Hb_001754_080 Hb_001754_080 Hb_004158_020--Hb_001754_080 Hb_004007_110 Hb_004007_110 Hb_004158_020--Hb_004007_110 Hb_000023_310 Hb_000023_310 Hb_004158_020--Hb_000023_310 Hb_002110_100--Hb_032920_070 Hb_003305_040 Hb_003305_040 Hb_002110_100--Hb_003305_040 Hb_002392_010 Hb_002392_010 Hb_002110_100--Hb_002392_010 Hb_005653_070 Hb_005653_070 Hb_002110_100--Hb_005653_070 Hb_005701_120 Hb_005701_120 Hb_002110_100--Hb_005701_120 Hb_000402_130--Hb_005701_120 Hb_033152_070 Hb_033152_070 Hb_000402_130--Hb_033152_070 Hb_000402_130--Hb_002110_100 Hb_003207_020 Hb_003207_020 Hb_000402_130--Hb_003207_020 Hb_000060_050 Hb_000060_050 Hb_000402_130--Hb_000060_050 Hb_000025_190 Hb_000025_190 Hb_000402_130--Hb_000025_190 Hb_020390_010 Hb_020390_010 Hb_032920_070--Hb_020390_010 Hb_000297_120 Hb_000297_120 Hb_032920_070--Hb_000297_120 Hb_032920_070--Hb_002392_010 Hb_015057_020 Hb_015057_020 Hb_032920_070--Hb_015057_020 Hb_000185_220 Hb_000185_220 Hb_032920_070--Hb_000185_220 Hb_001754_080--Hb_000060_050 Hb_001754_080--Hb_003305_040 Hb_001489_110 Hb_001489_110 Hb_001754_080--Hb_001489_110 Hb_001754_080--Hb_002110_100 Hb_002677_020 Hb_002677_020 Hb_001754_080--Hb_002677_020 Hb_000012_110 Hb_000012_110 Hb_004007_110--Hb_000012_110 Hb_007590_090 Hb_007590_090 Hb_004007_110--Hb_007590_090 Hb_004007_110--Hb_002110_100 Hb_028049_010 Hb_028049_010 Hb_004007_110--Hb_028049_010 Hb_012305_130 Hb_012305_130 Hb_004007_110--Hb_012305_130 Hb_002615_030 Hb_002615_030 Hb_000023_310--Hb_002615_030 Hb_002007_320 Hb_002007_320 Hb_000023_310--Hb_002007_320 Hb_001817_100 Hb_001817_100 Hb_000023_310--Hb_001817_100 Hb_000023_310--Hb_007590_090 Hb_003371_070 Hb_003371_070 Hb_000023_310--Hb_003371_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.30447 8.26955 20.6533 48.8172 6.13448 5.39037
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
10.6163 24.0701 19.9317 17.4238 26.1739

CAGE analysis