Hb_003207_020

Information

Type -
Description -
Location Contig3207: 13400-15634
Sequence    

Annotation

kegg
ID rcu:RCOM_1683000
description NAD dependent epimerase/dehydratase, putative
nr
ID XP_012087027.1
description PREDICTED: bifunctional dTDP-4-dehydrorhamnose 3,5-epimerase/dTDP-4-dehydrorhamnose reductase [Jatropha curcas]
swissprot
ID Q9LQ04
description Bifunctional dTDP-4-dehydrorhamnose 3,5-epimerase/dTDP-4-dehydrorhamnose reductase OS=Arabidopsis thaliana GN=NRS/ER PE=1 SV=1
trembl
ID A0A067JZU6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20686 PE=4 SV=1
Gene Ontology
ID GO:0005829
description probable rhamnose biosynthetic enzyme 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_33897: 13439-15510 , PASA_asmbl_33898: 14144-14380
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003207_020 0.0 - - PREDICTED: bifunctional dTDP-4-dehydrorhamnose 3,5-epimerase/dTDP-4-dehydrorhamnose reductase [Jatropha curcas]
2 Hb_033152_070 0.061326993 - - N-acetyl-gamma-glutamyl-phosphate reductase, putative [Ricinus communis]
3 Hb_001486_040 0.0736077659 - - PREDICTED: uncharacterized protein LOC105632624 isoform X1 [Jatropha curcas]
4 Hb_010042_020 0.0822482597 - - UDP-n-acteylglucosamine pyrophosphorylase, putative [Ricinus communis]
5 Hb_003994_030 0.0857079854 - - PREDICTED: organic cation/carnitine transporter 7 [Jatropha curcas]
6 Hb_000402_130 0.0877831655 - - PREDICTED: AP-1 complex subunit mu-2 [Jatropha curcas]
7 Hb_005701_120 0.0930038638 - - PREDICTED: V-type proton ATPase 16 kDa proteolipid subunit [Cucumis sativus]
8 Hb_185830_060 0.095725762 - - PREDICTED: ras-related protein RABB1c [Fragaria vesca subsp. vesca]
9 Hb_000107_110 0.105540291 - - nucleic acid binding protein, putative [Ricinus communis]
10 Hb_004881_030 0.1059072687 - - PREDICTED: uncharacterized protein LOC105629532 isoform X1 [Jatropha curcas]
11 Hb_000800_090 0.1063997834 rubber biosynthesis Gene Name: Dihydrolipoyllysine-residue acetyltransferase component 1 of pyruvate dehydrogenase complex PREDICTED: dihydrolipoyllysine-residue acetyltransferase component 1 of pyruvate dehydrogenase complex, mitochondrial [Jatropha curcas]
12 Hb_027073_010 0.1084432014 - - PREDICTED: protein CHROMOSOME TRANSMISSION FIDELITY 7 [Jatropha curcas]
13 Hb_048476_060 0.1085572089 - - PREDICTED: CRAL-TRIO domain-containing protein YKL091C-like isoform X2 [Jatropha curcas]
14 Hb_004525_040 0.1089815548 - - PREDICTED: sugar transporter ERD6-like 6 [Jatropha curcas]
15 Hb_000671_130 0.1109630394 - - PREDICTED: CMP-sialic acid transporter 2 isoform X2 [Jatropha curcas]
16 Hb_020390_010 0.111109163 - - PREDICTED: expansin-A13 [Jatropha curcas]
17 Hb_004607_070 0.1114594047 - - integral membrane protein, putative [Ricinus communis]
18 Hb_000928_190 0.1123744306 - - PREDICTED: putative acyl-activating enzyme 19 isoform X1 [Jatropha curcas]
19 Hb_002193_060 0.1123917379 - - PREDICTED: uncharacterized protein C4orf29 homolog [Pyrus x bretschneideri]
20 Hb_000240_030 0.1129879705 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_003207_020 Hb_003207_020 Hb_033152_070 Hb_033152_070 Hb_003207_020--Hb_033152_070 Hb_001486_040 Hb_001486_040 Hb_003207_020--Hb_001486_040 Hb_010042_020 Hb_010042_020 Hb_003207_020--Hb_010042_020 Hb_003994_030 Hb_003994_030 Hb_003207_020--Hb_003994_030 Hb_000402_130 Hb_000402_130 Hb_003207_020--Hb_000402_130 Hb_005701_120 Hb_005701_120 Hb_003207_020--Hb_005701_120 Hb_033152_070--Hb_010042_020 Hb_000928_190 Hb_000928_190 Hb_033152_070--Hb_000928_190 Hb_004525_040 Hb_004525_040 Hb_033152_070--Hb_004525_040 Hb_003052_180 Hb_003052_180 Hb_033152_070--Hb_003052_180 Hb_033152_070--Hb_000402_130 Hb_185830_060 Hb_185830_060 Hb_001486_040--Hb_185830_060 Hb_001486_040--Hb_010042_020 Hb_001486_040--Hb_033152_070 Hb_002193_060 Hb_002193_060 Hb_001486_040--Hb_002193_060 Hb_002955_020 Hb_002955_020 Hb_001486_040--Hb_002955_020 Hb_010042_020--Hb_000928_190 Hb_010042_020--Hb_004525_040 Hb_000107_110 Hb_000107_110 Hb_010042_020--Hb_000107_110 Hb_001957_010 Hb_001957_010 Hb_003994_030--Hb_001957_010 Hb_021943_090 Hb_021943_090 Hb_003994_030--Hb_021943_090 Hb_002110_100 Hb_002110_100 Hb_003994_030--Hb_002110_100 Hb_003994_030--Hb_002193_060 Hb_003994_030--Hb_005701_120 Hb_000402_130--Hb_005701_120 Hb_000402_130--Hb_002110_100 Hb_000060_050 Hb_000060_050 Hb_000402_130--Hb_000060_050 Hb_000025_190 Hb_000025_190 Hb_000402_130--Hb_000025_190 Hb_000800_090 Hb_000800_090 Hb_005701_120--Hb_000800_090 Hb_003988_050 Hb_003988_050 Hb_005701_120--Hb_003988_050 Hb_005701_120--Hb_002110_100 Hb_005701_120--Hb_185830_060 Hb_005701_120--Hb_001957_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
11.7476 12.1704 22.4471 79.9259 8.11913 11.8068
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
21.1935 21.4408 20.7874 32.5 43.6581

CAGE analysis