Hb_003994_030

Information

Type -
Description -
Location Contig3994: 6895-12443
Sequence    

Annotation

kegg
ID pop:POPTR_0007s15120g
description POPTRDRAFT_718063; hypothetical protein
nr
ID XP_012087281.1
description PREDICTED: organic cation/carnitine transporter 7 [Jatropha curcas]
swissprot
ID Q940M4
description Organic cation/carnitine transporter 7 OS=Arabidopsis thaliana GN=OCT7 PE=2 SV=1
trembl
ID A0A067JM06
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_22561 PE=4 SV=1
Gene Ontology
ID GO:0005622
description organic cation carnitine transporter 7-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_39719: 7114-8539 , PASA_asmbl_39720: 8716-10974
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003994_030 0.0 - - PREDICTED: organic cation/carnitine transporter 7 [Jatropha curcas]
2 Hb_001957_010 0.0816281611 - - PREDICTED: probable sugar phosphate/phosphate translocator At3g14410 isoform X1 [Jatropha curcas]
3 Hb_003207_020 0.0857079854 - - PREDICTED: bifunctional dTDP-4-dehydrorhamnose 3,5-epimerase/dTDP-4-dehydrorhamnose reductase [Jatropha curcas]
4 Hb_021943_090 0.0898244623 - - PREDICTED: probable methylenetetrahydrofolate reductase [Jatropha curcas]
5 Hb_002110_100 0.1008553291 - - PREDICTED: pyridoxine/pyridoxamine 5'-phosphate oxidase 1, chloroplastic [Jatropha curcas]
6 Hb_002193_060 0.100857803 - - PREDICTED: uncharacterized protein C4orf29 homolog [Pyrus x bretschneideri]
7 Hb_005701_120 0.1010786573 - - PREDICTED: V-type proton ATPase 16 kDa proteolipid subunit [Cucumis sativus]
8 Hb_002392_010 0.1012288189 - - PREDICTED: apurinic endonuclease-redox protein isoform X4 [Jatropha curcas]
9 Hb_020390_010 0.1016781036 - - PREDICTED: expansin-A13 [Jatropha curcas]
10 Hb_185830_060 0.102237098 - - PREDICTED: ras-related protein RABB1c [Fragaria vesca subsp. vesca]
11 Hb_000367_180 0.1028554844 - - Heparanase-2, putative [Ricinus communis]
12 Hb_000638_070 0.1035910338 - - PREDICTED: protein trichome birefringence-like 14 [Jatropha curcas]
13 Hb_001663_040 0.1037050573 - - hypothetical protein B456_007G162000 [Gossypium raimondii]
14 Hb_032920_070 0.105819746 - - PREDICTED: zinc finger protein-like 1 homolog [Jatropha curcas]
15 Hb_007894_010 0.1062526689 - - PREDICTED: uncharacterized protein LOC105632963 [Jatropha curcas]
16 Hb_001946_390 0.106782871 - - PREDICTED: NADH-cytochrome b5 reductase-like protein [Jatropha curcas]
17 Hb_066842_010 0.1074585091 - - PREDICTED: probable 6-phosphogluconolactonase 4, chloroplastic [Jatropha curcas]
18 Hb_000665_180 0.1091857369 - - PREDICTED: ER membrane protein complex subunit 7 homolog isoform X2 [Jatropha curcas]
19 Hb_003605_020 0.1096023864 - - exocyst complex component sec6, putative [Ricinus communis]
20 Hb_000240_030 0.1107202587 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_003994_030 Hb_003994_030 Hb_001957_010 Hb_001957_010 Hb_003994_030--Hb_001957_010 Hb_003207_020 Hb_003207_020 Hb_003994_030--Hb_003207_020 Hb_021943_090 Hb_021943_090 Hb_003994_030--Hb_021943_090 Hb_002110_100 Hb_002110_100 Hb_003994_030--Hb_002110_100 Hb_002193_060 Hb_002193_060 Hb_003994_030--Hb_002193_060 Hb_005701_120 Hb_005701_120 Hb_003994_030--Hb_005701_120 Hb_065968_010 Hb_065968_010 Hb_001957_010--Hb_065968_010 Hb_003605_020 Hb_003605_020 Hb_001957_010--Hb_003605_020 Hb_000197_190 Hb_000197_190 Hb_001957_010--Hb_000197_190 Hb_001507_120 Hb_001507_120 Hb_001957_010--Hb_001507_120 Hb_000395_280 Hb_000395_280 Hb_001957_010--Hb_000395_280 Hb_033152_070 Hb_033152_070 Hb_003207_020--Hb_033152_070 Hb_001486_040 Hb_001486_040 Hb_003207_020--Hb_001486_040 Hb_010042_020 Hb_010042_020 Hb_003207_020--Hb_010042_020 Hb_000402_130 Hb_000402_130 Hb_003207_020--Hb_000402_130 Hb_003207_020--Hb_005701_120 Hb_000979_130 Hb_000979_130 Hb_021943_090--Hb_000979_130 Hb_000367_180 Hb_000367_180 Hb_021943_090--Hb_000367_180 Hb_000260_510 Hb_000260_510 Hb_021943_090--Hb_000260_510 Hb_000800_090 Hb_000800_090 Hb_021943_090--Hb_000800_090 Hb_000665_180 Hb_000665_180 Hb_021943_090--Hb_000665_180 Hb_032920_070 Hb_032920_070 Hb_002110_100--Hb_032920_070 Hb_003305_040 Hb_003305_040 Hb_002110_100--Hb_003305_040 Hb_002392_010 Hb_002392_010 Hb_002110_100--Hb_002392_010 Hb_004158_020 Hb_004158_020 Hb_002110_100--Hb_004158_020 Hb_005653_070 Hb_005653_070 Hb_002110_100--Hb_005653_070 Hb_002110_100--Hb_005701_120 Hb_185830_060 Hb_185830_060 Hb_002193_060--Hb_185830_060 Hb_000375_300 Hb_000375_300 Hb_002193_060--Hb_000375_300 Hb_000395_110 Hb_000395_110 Hb_002193_060--Hb_000395_110 Hb_018845_010 Hb_018845_010 Hb_002193_060--Hb_018845_010 Hb_000007_090 Hb_000007_090 Hb_002193_060--Hb_000007_090 Hb_007416_070 Hb_007416_070 Hb_002193_060--Hb_007416_070 Hb_005701_120--Hb_000402_130 Hb_005701_120--Hb_000800_090 Hb_003988_050 Hb_003988_050 Hb_005701_120--Hb_003988_050 Hb_005701_120--Hb_185830_060 Hb_005701_120--Hb_001957_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.91214 1.06095 4.72161 9.40359 1.68537 1.53509
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.49046 3.07814 3.42221 4.85606 6.57649

CAGE analysis