Hb_000800_090

Information

Type rubber biosynthesis
Description Gene Name: Dihydrolipoyllysine-residue acetyltransferase component 1 of pyruvate dehydrogenase complex
Location Contig800: 193975-205764
Sequence    

Annotation

kegg
ID rcu:RCOM_1292180
description dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase, putative (EC:2.3.1.61)
nr
ID XP_012090179.1
description PREDICTED: dihydrolipoyllysine-residue acetyltransferase component 1 of pyruvate dehydrogenase complex, mitochondrial [Jatropha curcas]
swissprot
ID Q0WQF7
description Dihydrolipoyllysine-residue acetyltransferase component 1 of pyruvate dehydrogenase complex, mitochondrial OS=Arabidopsis thaliana GN=LTA3 PE=2 SV=2
trembl
ID A0A067LL14
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_01544 PE=3 SV=1
Gene Ontology
ID GO:0016746
description dihydrolipoyllysine-residue acetyltransferase component 1 of pyruvate dehydrogenase mitochondrial-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_58769: 193825-216628
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000800_090 0.0 rubber biosynthesis Gene Name: Dihydrolipoyllysine-residue acetyltransferase component 1 of pyruvate dehydrogenase complex PREDICTED: dihydrolipoyllysine-residue acetyltransferase component 1 of pyruvate dehydrogenase complex, mitochondrial [Jatropha curcas]
2 Hb_005701_120 0.0787946323 - - PREDICTED: V-type proton ATPase 16 kDa proteolipid subunit [Cucumis sativus]
3 Hb_000025_190 0.0829618573 - - 26S proteasome non-atpase regulatory subunit, putative [Ricinus communis]
4 Hb_001946_310 0.0833299956 - - PREDICTED: probable ethanolamine kinase isoform X2 [Jatropha curcas]
5 Hb_004046_030 0.0879134173 - - PREDICTED: GPCR-type G protein 1 [Jatropha curcas]
6 Hb_000185_220 0.0893869528 - - PREDICTED: uncharacterized protein LOC105631115 [Jatropha curcas]
7 Hb_005648_010 0.0914015692 - - PREDICTED: malate dehydrogenase, glyoxysomal isoform X1 [Jatropha curcas]
8 Hb_000197_190 0.0928703151 - - PREDICTED: diaminopimelate decarboxylase 2, chloroplastic-like [Jatropha curcas]
9 Hb_000548_070 0.0933784532 desease resistance Gene Name: Synthase_beta RecName: Full=ATP synthase subunit beta, mitochondrial; Flags: Precursor [Hevea brasiliensis]
10 Hb_007383_020 0.093934647 - - conserved hypothetical protein [Ricinus communis]
11 Hb_007416_070 0.0941711917 transcription factor TF Family: B3 hypothetical protein JCGZ_07038 [Jatropha curcas]
12 Hb_000928_190 0.0964510321 - - PREDICTED: putative acyl-activating enzyme 19 isoform X1 [Jatropha curcas]
13 Hb_000035_390 0.0972752855 - - hypothetical protein CISIN_1g003355mg [Citrus sinensis]
14 Hb_012678_020 0.0973474828 - - PREDICTED: outer envelope protein 61 isoform X1 [Jatropha curcas]
15 Hb_006059_010 0.0988996219 - - PREDICTED: uncharacterized protein LOC105648671 [Jatropha curcas]
16 Hb_003206_110 0.0991246366 - - Putative 1-aminocyclopropane-1-carboxylate deaminase [Gossypium arboreum]
17 Hb_009615_060 0.0992532958 - - PREDICTED: prolyl endopeptidase-like [Jatropha curcas]
18 Hb_000402_130 0.0996252298 - - PREDICTED: AP-1 complex subunit mu-2 [Jatropha curcas]
19 Hb_001799_060 0.0999897744 - - Rab6 [Hevea brasiliensis]
20 Hb_003988_050 0.1008094144 - - PREDICTED: zinc finger protein-like 1 homolog [Jatropha curcas]

Gene co-expression network

sample Hb_000800_090 Hb_000800_090 Hb_005701_120 Hb_005701_120 Hb_000800_090--Hb_005701_120 Hb_000025_190 Hb_000025_190 Hb_000800_090--Hb_000025_190 Hb_001946_310 Hb_001946_310 Hb_000800_090--Hb_001946_310 Hb_004046_030 Hb_004046_030 Hb_000800_090--Hb_004046_030 Hb_000185_220 Hb_000185_220 Hb_000800_090--Hb_000185_220 Hb_005648_010 Hb_005648_010 Hb_000800_090--Hb_005648_010 Hb_000402_130 Hb_000402_130 Hb_005701_120--Hb_000402_130 Hb_003988_050 Hb_003988_050 Hb_005701_120--Hb_003988_050 Hb_002110_100 Hb_002110_100 Hb_005701_120--Hb_002110_100 Hb_185830_060 Hb_185830_060 Hb_005701_120--Hb_185830_060 Hb_001957_010 Hb_001957_010 Hb_005701_120--Hb_001957_010 Hb_062537_010 Hb_062537_010 Hb_000025_190--Hb_062537_010 Hb_002660_170 Hb_002660_170 Hb_000025_190--Hb_002660_170 Hb_004880_150 Hb_004880_150 Hb_000025_190--Hb_004880_150 Hb_000025_190--Hb_005648_010 Hb_000025_190--Hb_003988_050 Hb_000115_150 Hb_000115_150 Hb_000025_190--Hb_000115_150 Hb_001799_060 Hb_001799_060 Hb_001946_310--Hb_001799_060 Hb_001946_310--Hb_000402_130 Hb_001318_050 Hb_001318_050 Hb_001946_310--Hb_001318_050 Hb_003305_020 Hb_003305_020 Hb_001946_310--Hb_003305_020 Hb_001946_310--Hb_000025_190 Hb_003206_110 Hb_003206_110 Hb_004046_030--Hb_003206_110 Hb_006277_010 Hb_006277_010 Hb_004046_030--Hb_006277_010 Hb_170138_010 Hb_170138_010 Hb_004046_030--Hb_170138_010 Hb_004046_030--Hb_000185_220 Hb_012678_020 Hb_012678_020 Hb_004046_030--Hb_012678_020 Hb_006059_010 Hb_006059_010 Hb_000185_220--Hb_006059_010 Hb_001195_400 Hb_001195_400 Hb_000185_220--Hb_001195_400 Hb_000185_220--Hb_003206_110 Hb_001080_300 Hb_001080_300 Hb_000185_220--Hb_001080_300 Hb_000309_050 Hb_000309_050 Hb_000185_220--Hb_000309_050 Hb_001975_150 Hb_001975_150 Hb_000185_220--Hb_001975_150 Hb_002093_060 Hb_002093_060 Hb_005648_010--Hb_002093_060 Hb_002357_060 Hb_002357_060 Hb_005648_010--Hb_002357_060 Hb_005648_010--Hb_004880_150 Hb_005648_010--Hb_000115_150 Hb_000120_370 Hb_000120_370 Hb_005648_010--Hb_000120_370
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.69808 3.77744 5.29608 14.0173 2.3729 3.97223
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.58109 4.72239 6.34679 10.6286 9.26659

CAGE analysis