Hb_003206_110

Information

Type -
Description -
Location Contig3206: 167997-181390
Sequence    

Annotation

kegg
ID rcu:RCOM_0582700
description 1-aminocyclopropane-1-carboxylate deaminase, putative (EC:3.5.99.7)
nr
ID KHG12264.1
description Putative 1-aminocyclopropane-1-carboxylate deaminase [Gossypium arboreum]
swissprot
ID Q6ZHE5
description Putative D-cysteine desulfhydrase 1, mitochondrial OS=Oryza sativa subsp. japonica GN=Os02g0773300 PE=2 SV=2
trembl
ID A0A0B0NKF0
description Putative 1-aminocyclopropane-1-carboxylate deaminase OS=Gossypium arboreum GN=F383_06387 PE=4 SV=1
Gene Ontology
ID GO:0005739
description 1-aminocyclopropane-1-carboxylate deaminase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_33879: 173338-181380
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003206_110 0.0 - - Putative 1-aminocyclopropane-1-carboxylate deaminase [Gossypium arboreum]
2 Hb_170138_010 0.045883645 - - conserved hypothetical protein [Ricinus communis]
3 Hb_004046_030 0.0517741641 - - PREDICTED: GPCR-type G protein 1 [Jatropha curcas]
4 Hb_000185_220 0.0678151486 - - PREDICTED: uncharacterized protein LOC105631115 [Jatropha curcas]
5 Hb_001195_400 0.0686097224 - - glucose-6-phosphate isomerase, putative [Ricinus communis]
6 Hb_000359_210 0.0695128159 - - conserved hypothetical protein [Ricinus communis]
7 Hb_006277_010 0.0747693022 - - PREDICTED: protein transport protein Sec61 subunit alpha-like [Gossypium raimondii]
8 Hb_000656_010 0.0751972318 - - PREDICTED: uncharacterized protein LOC105631354 isoform X1 [Jatropha curcas]
9 Hb_000309_050 0.0800571524 - - PREDICTED: CASP-like protein 4A1 isoform X1 [Jatropha curcas]
10 Hb_001975_150 0.0814852307 - - PREDICTED: RINT1-like protein MAG2L [Jatropha curcas]
11 Hb_005725_130 0.0830557445 - - PREDICTED: uncharacterized protein KIAA0930 homolog isoform X2 [Jatropha curcas]
12 Hb_000976_100 0.0862919044 - - eukaryotic translation elongation factor, putative [Ricinus communis]
13 Hb_000684_210 0.0866627422 - - PREDICTED: uncharacterized protein LOC105642177 [Jatropha curcas]
14 Hb_002928_090 0.0871094882 - - PREDICTED: metallocarboxypeptidase A-like protein TRV_02598 [Jatropha curcas]
15 Hb_009569_040 0.0871623006 - - PREDICTED: uncharacterized protein LOC105635573 [Jatropha curcas]
16 Hb_000069_210 0.0873311697 - - PREDICTED: exportin-2 [Jatropha curcas]
17 Hb_001080_300 0.0891326923 - - PREDICTED: F-box protein SKIP17-like [Jatropha curcas]
18 Hb_003544_160 0.0894437918 - - -
19 Hb_000297_120 0.0898010842 - - PREDICTED: sorting nexin 1 [Jatropha curcas]
20 Hb_003159_050 0.0910911166 - - PREDICTED: 3-hydroxyisobutyryl-CoA hydrolase-like protein 3, mitochondrial isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_003206_110 Hb_003206_110 Hb_170138_010 Hb_170138_010 Hb_003206_110--Hb_170138_010 Hb_004046_030 Hb_004046_030 Hb_003206_110--Hb_004046_030 Hb_000185_220 Hb_000185_220 Hb_003206_110--Hb_000185_220 Hb_001195_400 Hb_001195_400 Hb_003206_110--Hb_001195_400 Hb_000359_210 Hb_000359_210 Hb_003206_110--Hb_000359_210 Hb_006277_010 Hb_006277_010 Hb_003206_110--Hb_006277_010 Hb_170138_010--Hb_001195_400 Hb_170138_010--Hb_000185_220 Hb_170138_010--Hb_004046_030 Hb_170138_010--Hb_000359_210 Hb_000684_210 Hb_000684_210 Hb_170138_010--Hb_000684_210 Hb_004046_030--Hb_006277_010 Hb_004046_030--Hb_000185_220 Hb_000800_090 Hb_000800_090 Hb_004046_030--Hb_000800_090 Hb_012678_020 Hb_012678_020 Hb_004046_030--Hb_012678_020 Hb_006059_010 Hb_006059_010 Hb_000185_220--Hb_006059_010 Hb_000185_220--Hb_001195_400 Hb_001080_300 Hb_001080_300 Hb_000185_220--Hb_001080_300 Hb_000309_050 Hb_000309_050 Hb_000185_220--Hb_000309_050 Hb_001975_150 Hb_001975_150 Hb_000185_220--Hb_001975_150 Hb_000078_140 Hb_000078_140 Hb_001195_400--Hb_000078_140 Hb_012733_040 Hb_012733_040 Hb_001195_400--Hb_012733_040 Hb_001195_400--Hb_000359_210 Hb_002897_090 Hb_002897_090 Hb_000359_210--Hb_002897_090 Hb_002027_080 Hb_002027_080 Hb_000359_210--Hb_002027_080 Hb_002874_110 Hb_002874_110 Hb_000359_210--Hb_002874_110 Hb_004679_030 Hb_004679_030 Hb_000359_210--Hb_004679_030 Hb_006277_010--Hb_170138_010 Hb_000950_010 Hb_000950_010 Hb_006277_010--Hb_000950_010 Hb_006277_010--Hb_000185_220 Hb_005601_040 Hb_005601_040 Hb_006277_010--Hb_005601_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.11624 5.53155 7.97437 17.732 6.02942 8.51434
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.5857 7.04235 10.0695 13.9801 18.4041

CAGE analysis